Hi guys- new here hope this is the right medium for getting questions
answered.
I hope someone can shed some light as to what i am doing wrong here
I am trying to extract subsequence data from a RichSequence as follows:
RichSequenceIterator seqs=RichSequence.IOTools.readFastaDNA(input, ns);
RichSequence rs=seqs.nextRichSequence();
return RichSequence.Tools.subSequence(rs, startCoord,
endCoord,rs.getNamespace(),seqName,
rs.getAccession(), rs.getIdentifier(),
rs.getVersion(),rs.getSeqVersion());
When I check my result againt the expected i find that for example
5001-5175 yeilds a sequence located at 10001 and 10175
Any insights as to why?
I hope so
Thanks for your help
Ella
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