I missed posting my answer to the list too.
Am Mittwoch, 8. Mai 2013 schrieb Janier J. Ramírez : > Yes, already it works fine, thanks ! > > Janier > > ----- Mensaje original ----- > De: "Hannes Brandstätter-Müller" <bioj...@hannes.oib.com <javascript:;>> > Para: "Janier J. Ramírez" <jjrami...@estudiantes.uci.cu <javascript:;>> > Enviados: Miércoles, 8 de Mayo 2013 5:59:54 > Asunto: [Biojava-l] Getting reverse complement > > Usually, gaps are signified by - (probably . works too) > > > > > Am Mittwoch, 8. Mai 2013 schrieb Janier J. Ramírez : > > > I'm triyng to get the reverse complement from a sequence with gaps > (represented as ':'), but biojava thow an IllegalSymbolException, is this a > bug or what is the symbol to represent gaps in biojava ? > > Here is the error. > > > org.biojava.bio.symbol.IllegalSymbolException: This tokenization doesn't > contain character: ':' > at > org.biojava.bio.seq.io.CharacterTokenization.parseTokenChar(CharacterTokenization.java:175) > at > org.biojava.bio.seq.io.CharacterTokenization$TPStreamParser.characters(CharacterTokenization.java:246) > at > org.biojava.bio.symbol.SimpleSymbolList.<init>(SimpleSymbolList.java:178) > at org.biojava.bio.seq.DNATools.createDNA(DNATools.java:204) > > > Greetings > > Janier > > -- > > Universidad de las Ciencias Informáticas > Janier J. Ramírez Landaburo > Facultad - 6 > Tel-837-3121 > http://www.uci.cu > > _______________________________________________ > Biojava-l mailing list - Biojava-l@lists.open-bio.org <javascript:;> > http://lists.open-bio.org/mailman/listinfo/biojava-l > http://www.uci.cu > _______________________________________________ Biojava-l mailing list - Biojava-l@lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/biojava-l