you might want to learn how to use an IDE, such as eclipse. http://biojava.org/wiki/BioJava3_eclipse
Andreas On Mon, Jul 22, 2013 at 9:25 PM, Peng Yu <pengyu...@gmail.com> wrote: > Hi, > > I see some demos in biojava3 source repository. > > ~/dvcs_src/biojava/biojava3-alignment/src/main/java/demo$ dir > CookbookMSA.java DemoAlignProteins.java DemoLoadSubstMax.java > TestDNANeedlemanWunsch.java > > I just learned how to use mvn to start a new project and added biojava > info to pom.xml as in the following. But I'm not sure how to compile > the demo and run it. Could anybody show the detailed procedure on how > to use them? Thanks. > > ~/linux/test/java/maven/bin/mvn/my-app$ cat pom.xml > <project xmlns="http://maven.apache.org/POM/4.0.0"; > xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"; > xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 > http://maven.apache.org/maven-v4_0_0.xsd";> > <modelVersion>4.0.0</modelVersion> > <groupId>com.mycompany.app</groupId> > <artifactId>my-app</artifactId> > <packaging>jar</packaging> > <version>1.0-SNAPSHOT</version> > <name>my-app</name> > <url>http://maven.apache.org</url> > <dependencies> > <dependency> > <groupId>junit</groupId> > <artifactId>junit</artifactId> > <version>3.8.1</version> > <scope>test</scope> > </dependency> > <dependency> > <groupId>org.biojava</groupId> > <artifactId>biojava3-core</artifactId> > <version>3.0.6</version> > </dependency> > </dependencies> > <repositories> > <repository> > <id>biojava-maven-repo</id> > <name>BioJava repository</name> > <url>http://www.biojava.org/download/maven/</url> > </repository> > </repositories> > </project> > > -- > Regards, > Peng > _______________________________________________ > Biojava-l mailing list - Biojava-l@lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/biojava-l > - _______________________________________________ Biojava-l mailing list - Biojava-l@lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/biojava-l
