Yes, those instructions were made for Juno. I have not upgraded to Kepler as of yet and can't comment if this still works exactly the same...
Andreas On Tue, Jul 23, 2013 at 6:46 AM, Peng Yu <pengyu...@gmail.com> wrote: > Hi, > > I installed eclipse-java-kepler-R-macosx-cocoa-x86_64.tar.gz. > > I'm now following this step. But I don't set 'm2e - Maven Integration > for Eclipse'. Is the tutorial for previous versions of eclipse but not > the current version? > > http://biojava.org/wiki/BioJava3_eclipse#Plugin_Installation > > On Tue, Jul 23, 2013 at 8:16 AM, Andreas Prlic <andr...@sdsc.edu> wrote: > > you might want to learn how to use an IDE, such as eclipse. > > > > http://biojava.org/wiki/BioJava3_eclipse > > > > Andreas > > > > > > On Mon, Jul 22, 2013 at 9:25 PM, Peng Yu <pengyu...@gmail.com> wrote: > >> > >> Hi, > >> > >> I see some demos in biojava3 source repository. > >> > >> ~/dvcs_src/biojava/biojava3-alignment/src/main/java/demo$ dir > >> CookbookMSA.java DemoAlignProteins.java DemoLoadSubstMax.java > >> TestDNANeedlemanWunsch.java > >> > >> I just learned how to use mvn to start a new project and added biojava > >> info to pom.xml as in the following. But I'm not sure how to compile > >> the demo and run it. Could anybody show the detailed procedure on how > >> to use them? Thanks. > >> > >> ~/linux/test/java/maven/bin/mvn/my-app$ cat pom.xml > >> <project xmlns="http://maven.apache.org/POM/4.0.0" > >> xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" > >> xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 > >> http://maven.apache.org/maven-v4_0_0.xsd"> > >> <modelVersion>4.0.0</modelVersion> > >> <groupId>com.mycompany.app</groupId> > >> <artifactId>my-app</artifactId> > >> <packaging>jar</packaging> > >> <version>1.0-SNAPSHOT</version> > >> <name>my-app</name> > >> <url>http://maven.apache.org</url> > >> <dependencies> > >> <dependency> > >> <groupId>junit</groupId> > >> <artifactId>junit</artifactId> > >> <version>3.8.1</version> > >> <scope>test</scope> > >> </dependency> > >> <dependency> > >> <groupId>org.biojava</groupId> > >> <artifactId>biojava3-core</artifactId> > >> <version>3.0.6</version> > >> </dependency> > >> </dependencies> > >> <repositories> > >> <repository> > >> <id>biojava-maven-repo</id> > >> <name>BioJava repository</name> > >> <url>http://www.biojava.org/download/maven/</url> > >> </repository> > >> </repositories> > >> </project> > >> > >> -- > >> Regards, > >> Peng > >> _______________________________________________ > >> Biojava-l mailing list - Biojava-l@lists.open-bio.org > >> http://lists.open-bio.org/mailman/listinfo/biojava-l > > > > > > > > > > - > > > > -- > Regards, > Peng > -- ----------------------------------------------------------------------- Dr. Andreas Prlic Senior Scientist, RCSB PDB Protein Data Bank University of California, San Diego (+1) 858.246.0526 ----------------------------------------------------------------------- _______________________________________________ Biojava-l mailing list - Biojava-l@lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/biojava-l