Certainly, the heaviest load was during the initial backup; the
incremental backups move much less data, and in particular the really
big files (ISOs and movies) don't get changed and so don't get copied.
However, there was slow down (although much less) during subsequent
incremental backups; I believe this comes from other big files, like
virtual machine state files and so forth. It's a little hard to tell
which file was causing it, since I don't know of a way to tell which
file is currently being copied; the notification area icon provides a
dialog box but its content isn't updated dynamically. (As an aside, it
would be nice if clicking on the notification icon opened a running log
of the backup procedure.)

In regard to your second question, I'm not really sure what you mean by
schedle per included folder. Is this a configuration option? What effect
is it supposed to have? I'm happy to try it and report back to you.

-- 
Backup slows down system, doesn't throttle I/O
https://bugs.launchpad.net/bugs/482931
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Status in Back In Time: New

Bug description:
When BIT is actively copying data, the system is significantly less responsive 
because of the disk load. BIT should be more polite. It should use ionice to 
set its I/O to a lower priority and it should use a slow, background copy 
mechanism to copy files in a way that's less intrusive to foreground processes.

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