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You can use e.g. Moleman with the command PIR_sequence_file
Juergen
Bottomley, Matthew wrote:
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Hello,
could anyone tell me how to get the single-letter amino acid sequence out of
a PDB file, e.g. in fasta format?
I would like to do this so that I can compare it with the 'expected'
sequence, since e.g. arp/warp sometimes puts an Ala when there is a Lys with
poor side-chain density....
Thanks.
Matt
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Jürgen Bosch
Howard Hughes Medical Institute and
University of Washington
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