Hello all, right, I think I have found a ligand bound to my protein.
I used the COOT utility to find the ligands after reading in a model and library
file generated by sketcher of my ligand. Now I am a bit unsure as to how to proceed? How can I 'accept' a state and/or refine it? Maybe there is a better way to model my ligand into the electron density not accounted for by my protein? Any general suggestions or comments would be appreciated as I am very inexperienced. cheers Brenda