Thanks for a very quick answer, it indeed solved the problem.
Cheers,
Ronnie
On Apr 24, 2008, at 4:55 PM, Chris Richardson wrote:
On 24 Apr 2008, at 3:38 PM, Ronnie Berntsson wrote:
I've got a rather weird problem when trying to run arp/warp. When
trying to run arp/warp (latest version 7.0.1) it complains that I
should install a newer version of Refmac (5.4.0045). The version of
Refmac I have installed is 5.4.0066, and thats what is being used
if I run Refmac both from terminal or via CCP4i. However, when arp/
warp starts to run it magically finds a refmac 5.2.something and
uses that. Reinstalling arp/warp did not help, even though the
install script showed that I had refmac 5.4.0066 installed... I'm
running OS X 10.5.2 and have installed ccp4 and refmac via fink.
All other CCP4 programs work fine and Refmac runs normally as well,
it's only when it's called from arp/warp that something goes
wrong.. All ideas to fix this problem are most welcome.
This is an interesting feature of the Fink CCP4/Refmac
installation. When you install the new refmac in Fink, you get an
executable called refmac-5.4, which lives in /sw/share/xtal/
ccp4-6.0.2/bin. The refmac5 that you get from the terminal lives
in /sw/bin and is a symbolic link to this executable. However, in /
sw/share/xtal/ccp4-6.0.2/bin there still lurks an executable
refmac5, and this is version 5.2.0019. When you run ARP/wARP from
the GUI, it seems that this is the executable that it uses - hence
the version warnings. In our experience, this also breaks flex-wARP
when run through the GUI.
Whether this is just a symptom of the way I use Fink to install
things, or whether it's a problem for everyone, I don't know. I
have a solution to this, although it may not be the most elegant
one. I move the old refmac5 out of the way, and create a new
symbolic link
mv /sw/share/xtal/ccp4-6.0.2/bin/refmac5 /sw/share/xtal/
ccp4-6.0.2/bin/refmac5.old
ln -s /sw/share/xtal/ccp4-6.0.2/bin/refmac-5.4 /sw/share/xtal/
ccp4-6.0.2/bin/refmac5
(This is from memory, so the details may not be correct.)
Hope this helps,
Chris
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On Apr 24, 2008, at 4:56 PM, Anastassis Perrakis wrote:
in arp/warp classic the script does not call refmac5 (the first
thing in your path) but $CBIN/refmac5 (refmac from the CBIN place)
I suspect that you still kept refmac 5.2 in the official CBIN
directory and put refmac5 in another location but earlier in your
path, so its picked up first ...
try
refmac5 -i
and
$CBIN/refmac5 -i
I suspect they will give different results. My best guess at least ...
A.
