Boaz,I recently saw the same message, after installing (binary) 6.1.1 . The workaround that seems to work for me is to start a new project from scratch.
The "STARTING" problem may have to do with the line 127.0.0.1 localhost.localdomain localhost missing from /etc/hosts - did you check that? HTH, Kay Boaz Shaanan schrieb:
Hi,On a newly installed v 6.1.1 I (built from source) I can't get refmac to start from the gui (other programs, such as pointless and phaser, run fine). The latest patches have also been installed. When I start a refmac job that runs file under 6.1.0 (the binary built) the job gets stuck and the gui reports 'starting' for the job without switching to 'running'. The latest refmac version from York is installed (5.0.92) and again, it runs fine under 6.1.0.These lines appear in the window from which the ccp4i was launched after starting the job:can't set "ATOM(0)": variable isn't array while executing "set [subst $root]([subst $indx0]) """ (procedure "ExecuteScript" line 50) invoked from within "ExecuteScript $system(SCRIPT)" ("script" arm line 8) invoked from within "switch $system(RUN_MODE) \ script { source [file join $env(CCP4I_TOP) src execute.tcl] source [file join $env(CCP4I_TOP) src job_utils..." (file "/home/boaz/ccp4/ccp4-6.1.1/ccp4i/bin/ccp4ish.tcl" line 145) invoked from within "source [file join $env(CCP4I_TOP) bin ccp4ish.tcl]" (file "/home/boaz/ccp4/ccp4-6.1.1/ccp4i/bin/ccp4ish" line 12)Does anybody have a clue on what could have gone wrong and how to fix the problem ?Thanks, Boaz Boaz Shaanan, Ph.D. Dept. of Life Sciences Ben-Gurion University of the Negev Beer-Sheva 84105 Israel Phone: 972-8-647-2220 ; Fax: 646-1710 Skype: boaz.shaanan
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