Hi Kay,
As usual, your remedy works. I started in a new project (subdirectory of the
former one) and all is OK. The job runs fine and there is no frozen 'starting'
declaration anymore. I'm still puzzled why it happens with refmac and not with
e.g. phaser, scala, pointless (all are programs that I ran in this project with
6.1.0 and earlier versions). I hope the ccp4 guys fix the problem soon.
Thanks for your help.
Cheers,
Boaz
----- Original Message -----
From: Kay Diederichs <kay.diederi...@uni-konstanz.de>
Date: Saturday, May 16, 2009 13:43
Subject: Re: [ccp4bb] problem starting refmac from ccp4i gui
To: CCP4BB@JISCMAIL.AC.UK
> Boaz,
>
> I recently saw the same message, after installing (binary) 6.1.1
> . The
> workaround that seems to work for me is to start a new project
> from scratch.
>
> The "STARTING" problem may have to do with the line
> 127.0.0.1 localhost.localdomain localhost
> missing from /etc/hosts - did you check that?
>
> HTH,
>
> Kay
>
> Boaz Shaanan schrieb:
> > Hi,
> >
> > On a newly installed v 6.1.1 I (built from source) I can't get
> refmac to
> > start from the gui (other programs, such as pointless and
> phaser, run
> > fine). The latest patches have also been installed. When I
> start a
> > refmac job that runs file under 6.1.0 (the binary built) the
> job gets
> > stuck and the gui reports 'starting' for the job without
> switching to
> > 'running'. The latest refmac version from York is installed
> (5.0.92) and
> > again, it runs fine under 6.1.0.
> >
> > These lines appear in the window from which the ccp4i was
> launched after
> > starting the job:
> >
> > can't set "ATOM(0)": variable isn't array
> > while executing
> > "set [subst $root]([subst $indx0]) """
> > (procedure "ExecuteScript" line 50)
> > invoked from within
> > "ExecuteScript $system(SCRIPT)"
> > ("script" arm line 8)
> > invoked from within
> > "switch $system(RUN_MODE) \
> > script {
> >
> > source [file join $env(CCP4I_TOP) src
> execute.tcl]> source [file join
> $env(CCP4I_TOP) src job_utils..."
> > (file "/home/boaz/ccp4/ccp4-
> 6.1.1/ccp4i/bin/ccp4ish.tcl" line 145)
> > invoked from within
> > "source [file join $env(CCP4I_TOP) bin ccp4ish.tcl]"
> > (file "/home/boaz/ccp4/ccp4-
> 6.1.1/ccp4i/bin/ccp4ish" line 12)
> >
> >
> > Does anybody have a clue on what could have gone wrong and how
> to fix
> > the problem ?
> >
> > Thanks,
> >
> > Boaz
> >
> >
> > Boaz Shaanan, Ph.D.
> > Dept. of Life Sciences
> > Ben-Gurion University of the Negev
> > Beer-Sheva 84105
> > Israel
> > Phone: 972-8-647-2220 ; Fax: 646-1710
> > Skype: boaz.shaanan
> >
> >
>
>
>
Boaz Shaanan, Ph.D.
Dept. of Life Sciences
Ben-Gurion University of the Negev
Beer-Sheva 84105
Israel
Phone: 972-8-647-2220 ; Fax: 646-1710
Skype: boaz.shaanan
