I am sorry, I have a very basic quarry regarding the PDB structures. How one
can  judge the quality of a deposited  PDB data set? Suppose,for e.g., two
PDB's have same R-values and  have determined at same resolutions with same
completeness.

You may want to work your way through this tutorial:

           http://xray.bmc.uu.se/embo/modval/

--Gerard

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