Dear Vandana, What kind of fold prediction? I have the impression that fold prediction will not give a sufficiently real model to use in MR
What means "100 % identical fold" ? Do you have root-mean-square deviation of CA atoms between your predicted fold and the model? Or maybe was the last step of "fold prediction" actually homology modeling on a protein with similar fold? Feeling skeptical today, Ed Vandana Kukshal wrote:
hello sir , recently i have collected one data of 3.0 A of a protein having no sequence homology with any known PDB . but while fold prediction i got 100 % identical fold with some of the protein . space group of my protein is P622 and showing 6 molecule in a assymetric unit. the homologous fold proteins are trimer protein. can i run MR in this case . how i should proceed. i m trying for MIR also . regards vandana
