Hi Mo

 

What you need to remember is that a relatively large amount of protein
is lost from smaller drops.  The ratio of surface area to volume is
greater.  With 100 + 100 nl drops about half of the protein is lost,
either as skin on the drops or on the plastic of the plate.

 

So when you scale up you need to reduce the protein by about half.
(Another approach, suggested by Heather Ringrose, is to put extra
protein into the drops at the screening stage, e.g. 200 nl protein + 100
nl reservoir solution.  The hits found can usually be scaled up by
dispensing 1 + 1 microlitre drops.)

 

This is counterintuitive because people expect the small drops to dry
out more quickly - so they expect, if anything, to get more
precipitation in the small drops.  Instead they get precipitation when
they scale up, assuming they keep the ratio of protein to reservoir
constant.

 

 

It can also help, when you scale up, to increase the salt by 50 to 100%
- this is indicated by data mining but I'm not sure what the mechanism
is

 

Hope that's helpful

 

Patrick

 

 

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From: CCP4 bulletin board [mailto:ccp...@jiscmail.ac.uk] On Behalf Of Mo
Wong
Sent: 18 August 2010 16:18
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] Scaling up from an Intelliplate to Linbro Plate

 

Hi all,

I know scaling up from a hit found from a high throughput screen is an
empirical process, but does anyone have a good rule of thumb as a
starting point when it comes to scaling up from a hit observed in an
Intelliplate to a Linbro plate (i.e., change in volume ratios, amount to
add to reservoir, etc)? I've Googled around but haven't seen anything
which either suggests I shouldn't be asking this question, I've not
looked hard enough, or it really is a case of "try and see".

Thanks

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