Hi Jon, a partial answer:
> 2) Under Refinement, Refinement Statistics section: Number unique > reflections (all) > > I looked in my log files for HKL2000, PHASER, and PHENIX but am confused on > where to find the required values above. I tried searching the logs for the > mmCIF items but that didn't help. Could someone point me the right > direction so I can deposit my structure with the correct values? a PDB file header with phenix.refine refined structure contains this number under REMARK 3 records. Can't ADIT extract this information automatically? Look in your PDB file for something like that: REMARK 3 NUMBER OF REFLECTIONS : 15114 Although, it's derivable information, meaning that if you deposit the data used for refinement then you should be safe. Pavel.