dear cai this is just because of problem with your pdb file,just try to remove alternate confirmations from the pdb,it will work for you.
all the best regards Atul Kumar IGIB Delhi India On Sun, Jun 19, 2011 at 10:46 AM, Qixu Cai <caiq...@gmail.com> wrote: > Dear all, > When I use APBS Tools2 plugin for PyMol, there are some errors. > > ------------------------------**------------------------------** > ------------------------------**- > Error: 6 > CmdException Exception in Tk callback > Function: <function <lambda> at 0x4080140> (type: <type 'function'>) > Args: () > Traceback (innermost last): > File "/usr/lib/python2.7/site-**packages/Pmw/Pmw_1_3/lib/**PmwBase.py", > line 1747, in __call__ > return apply(self.func, args) > File "/usr/lib/python2.7/site-**packages/Pmw/Pmw_1_3/lib/**PmwDialog.py", > line 153, in <lambda> > command=lambda self=self, name=name: self._doCommand(name)) > File "/usr/lib/python2.7/site-**packages/Pmw/Pmw_1_3/lib/**PmwDialog.py", > line 132, in _doCommand > return command(name) > File "/usr/lib64/python2.7/site-**packages/pmg_tk/startup/apbs_**tools.py", > line 974, in execute > good = self.generatePymolPqrFile() > File "/usr/lib64/python2.7/site-**packages/pmg_tk/startup/apbs_**tools.py", > line 1596, in generatePymolPqrFile > assign.missing_c_termini(sel) > File "/usr/lib64/python2.7/site-**packages/chempy/champ/assign.**py", > line 39, in missing_c_termini > while cmd.pop(tmp_sele2,tmp_sele1)>**0: # complete the carboxy terminus > File "/usr/lib64/python2.7/site-**packages/pymol/selecting.py", line 162, > in pop > if _self._raising(r,_self): raise pymol.CmdException > CmdException: <pymol.CmdException instance at 0x2aaaae057830> > ------------------------------**------------------------------** > ------------------------------**--------- > > Can anybody tell me how to solve these problems? > Thank you very much! > > > -- > Qixu Cai > Email: caiq...@gmail.com > School of Life Sciences, > Xiamen University, Fujian, China > **from thunderbird** >
