Hi Suda,

You can do this in Coot by loading the two structures, then using the tool 
Calculate-----> SSM superpose.

The rmsd value and sequence identity should be reported within your terminal 
window.

Hope that helps.

-Joe

Date: Thu, 18 Aug 2011 14:40:32 +0530
From: biobud...@gmail.com
Subject: [ccp4bb] structure based superposition
To: CCP4BB@JISCMAIL.AC.UK

Dear all,

I would like to know the tools/servers/programs that can be used for structure 
based superposition of two or more proteins. Please help me out..!!

Thanks,

-Suda
                                          

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