Dear all, thanks a lot for all your comments and suggestions for the alignment. I tested already the pdb server, which works great and I am currently installing a few other programs mentioned (Chimera, Prosmart.....) for comparison.
Best Regards Christian Am Freitag 13 Juli 2012 16:30:57 schrieb Christian Roth: > Dear all, > > I want align a couple or protein structures by secondary structure matching > to one target and want get a kind of aminoacid alignment file e.g. what > residue fit the other, without adjustments due to sequence based > alignments. > I tried Strap, but as far as I understood it, it takes also the sequence > into account. I tried also Rapido, but this does only a pairwise > comparison. Superpose does align it nicely (ccp4 based or Coot based) but > there seems to be no option to print the sequence alignment in a file and > it is again just a pairwise comparison . > Is there an other program which does something similar? > > Best Regards > > Christian >
