You should type Dss into pymol and this will assign more appropriate secondary structure
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of meisam nosrati Sent: Tuesday, 24 July 2012 9:47 a.m. To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Problem with making PDB from Coot Dear CCP4ers It seems like the text has not showed up, but I have a problem with making pdbs from coot. As I refine my structure ( with MR solution ) the beta sheets become loops while H-bondings are still there. I am not sure, if the problem is originating from making PDBs from coot. I will appriciate your help Meisam On Mon, Jul 23, 2012 at 5:31 PM, Meisam Nosrati <meisam.nosr...@gmail.com<mailto:meisam.nosr...@gmail.com>> wrote: