You should type Dss into pymol and this will assign more appropriate secondary 
structure

From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of meisam 
nosrati
Sent: Tuesday, 24 July 2012 9:47 a.m.
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] Problem with making PDB from Coot

Dear CCP4ers

It seems like the text has not showed up, but I have a problem with making pdbs 
from coot. As I refine my structure ( with MR solution ) the beta sheets become 
loops while H-bondings are still there.

I am not sure, if the problem is originating from making PDBs from coot.

I will appriciate your help

Meisam
On Mon, Jul 23, 2012 at 5:31 PM, Meisam Nosrati 
<meisam.nosr...@gmail.com<mailto:meisam.nosr...@gmail.com>> wrote:

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