-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Hello Ed,
did you try creating a ccp4 tree from source and replacing the refmac source? Maybe that ccp4 environment will help you compile refmac - at least with refmac I had the least trouble compiling when I got the ccp4 source. Why are you trying to do this anyhow? Do Garib's binaries not work under this Ubuntu installation? Best, Tim On 02/27/2013 06:27 PM, Ed Pozharski wrote: > I am trying to compile refmac from source on a machine running > Ubuntu 12.04. In a nutshell, after some troubleshooting I end up > with executable that generates a segmentation fault. Log-file > states that > >>>>>>> CCP4 library signal ccp4_parser:Failed to open >>>>>>> external command > file (Success) raised in ccp4_parser <<<<<< > > (hardly a success). Potentially relevant details are that I had to > compile libccp4 and libmmdb to get to this point. If I don't > configure the CCP4, I get this when trying to run refmac > >>>>>>> CCP4 library signal ccp4_general:Cannot open >>>>>>> environ.def (Error) > raised in ccp4fyp <<<<<< refmacgfortran: Cannot open environ.def > refmacgfortran: Cannot open environ.def > > So perhaps it's some incompatibility between libccp4/libmmdb that I > compiled and those that came with CCP4 installation (by the way, > the new update feature rocks indeed). But I tried lifting these > libraries from CCP4 installation when compiling refmac and I get > the same segmentation fault. > > Any suggestions for troubleshooting/advice on how to compile > refmac from source are appreciated. > > Refmac version is 5.7.0032. > > Cheers, > > Ed. > - -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.12 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iD8DBQFRMSASUxlJ7aRr7hoRAndOAKCSJo2xNOPnFQtXZVwVmtlozDnx2ACgjfoz EcnwFhUyH5ueOoI5LW5IVxg= =Gby6 -----END PGP SIGNATURE-----
