From the original ABC transporter retraction: http://www.sciencemag.org/content/314/5807/1875.2.full
"The Protein Data Bank (PDB) files 1JSQ, 1PF4, and 1Z2R for MsbA and 1S7B and 2F2M for EmrE have been moved to the archive of obsolete PDB entries"
You can get your hands on them via URLs like: ftp://ftp.rcsb.org/pub/pdb/data/structures/obsolete/XML/js/1jsq.xml.gz Phil Jeffrey Princeton On 10/17/13 10:26 AM, Nat Echols wrote:
On Thu, Oct 17, 2013 at 6:51 AM, Lucas <lucasbleic...@gmail.com <mailto:lucasbleic...@gmail.com>> wrote: I wonder if there's a list of problematic structures somewhere that I could use for that practice? Apart from a few ones I'm aware of because of (bad) publicity, what I usually do is an advanced search on PDB for entries with poor resolution and bound ligands, then checking then manually, hopefully finding some examples of creative map interpretation. But it would be nice to have specific examples for each thing that can go wrong in a PDB construction. This would be a good place to start: http://www.ncbi.nlm.nih.gov/pubmed/23385452 The retracted ABC transporter structures are also good, although less obvious to the untrained eye. I forget what the PDB IDs are but I'll see if I can dig them up. -Nat
