On 10/29/2013 03:23 AM, Katherine Sippel wrote:
Hi all,
I was wondering if anyone knew of a software or server to mine the PDB
for a specific class of interactions? I've tried PDBeMotif without much
luck and I thought I'd check to see if there was an alternative before I
go re-inventing the wheel.
Maybe this one (SuMo):
http://sumo-pbil.ibcp.fr/cgi-bin/sumo-welcome
paper:
http://bioinformatics.oxfordjournals.org/content/21/20/3929.full
Or this one (Drugsite):
https://drugsite.msi.umn.edu.
paper:
http://pubs.acs.org/doi/abs/10.1021/ci4002537
Cheers,
Katherine
--
"Nil illegitimo carborundum"/- /Didactylos
--
Best regards,
Francois Berenger.
https://www.linkedin.com/in/fberenger
