How about this server http://iris.physics.iisc.ernet.in/psap/
> On 10/29/2013 03:23 AM, Katherine Sippel wrote: >> Hi all, >> >> I was wondering if anyone knew of a software or server to mine the PDB >> for a specific class of interactions? I've tried PDBeMotif without much >> luck and I thought I'd check to see if there was an alternative before I >> go re-inventing the wheel. > > Maybe this one (SuMo): > http://sumo-pbil.ibcp.fr/cgi-bin/sumo-welcome > > paper: > http://bioinformatics.oxfordjournals.org/content/21/20/3929.full > > Or this one (Drugsite): > https://drugsite.msi.umn.edu. > > paper: > http://pubs.acs.org/doi/abs/10.1021/ci4002537 > >> Cheers, >> Katherine >> >> -- >> "Nil illegitimo carborundum"/- /Didactylos > > -- > Best regards, > Francois Berenger. > https://www.linkedin.com/in/fberenger > > -- > This message has been scanned for viruses and > dangerous content by MailScanner, and is > believed to be clean. > Could you kindly confirm the safe receipt of the mail please. All best wishes and regards, Yours sincerely, Dr. K. Sekar, Ph.D. Associate Professor Supercomputer Education and Research Centre Room No. 341, old Ecological Sciences Building (Second Floor) Indian Institute of Science Bangalore 560 012 INDIA E-mail: se...@physics.iisc.ernet.in se...@serc.iisc.ernet.in Tel: 91-(0)80-22933059/22933060/23600551 Fax: 91-(0)80-23600085 Home page: http://www.physics.iisc.ernet.in/~dichome/sekhome/index.html -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean.
