Dear Charlie,
could it be related to that furanose atoms now have primes (') instead
of asterisks (*) in their names?Best, Tim On 02/04/2015 05:30 PM, Carter, Charlie wrote: > I'm (still) using ccp4.6.1.1. > > Scripts that used to superimpose one tRNA on another now all return the error > > YOU HAVE FAILED TO FIND ANY ATOMS TO FIT > > I've looked high and low for a reason for this and failed. The pdb files > themselves look normal and behave well in PYMOL. They have CRYST1 cards. I > cannot even superimpose a file on itself! > > Anyone have any suggestions? > > Thanks so much, > > Charlie > > here is what I'm trying to implement: > > lsqkab XYZIN1 $1 XYZIN2 $2 XYZOUT $2_$1 >$2_$1.log << END-lsqkab > FIT RESIDUE MAIN 2 TO 6 > MATCH 2 to 6 > FIT RESIDUE MAIN 68 TO 72 > MATCH 68 to 72 > OUTPUT XYZ > END > END-lsqkab > -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A
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