I'm (still) using ccp4.6.1.1.

Scripts that used to superimpose one tRNA on another now all return the error 

YOU HAVE FAILED TO FIND ANY ATOMS TO FIT 

I've looked high and low for a reason for this and failed. The pdb files 
themselves look normal and behave well in PYMOL. They have CRYST1 cards. I 
cannot even superimpose a file on itself!

Anyone have any suggestions?

Thanks so much,

Charlie

here is what I'm trying to implement:

lsqkab XYZIN1 $1 XYZIN2 $2 XYZOUT $2_$1 >$2_$1.log << END-lsqkab
FIT RESIDUE MAIN 2 TO 6 
MATCH 2 to 6
FIT RESIDUE MAIN 68 TO 72 
MATCH 68 to 72
OUTPUT XYZ
END
END-lsqkab

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