Hello everybody,
I have superposed two structures based on the central beta-sheet CA
atoms with the "super" command in Pymol.
Now, I want to calculate the RMSD between ALL atoms or ALL CA atoms
without moving the structures again. The rms_cur command in Pymol would
do that, but only works if all atom identifiers match. Adding
"transform=0" to the super, oder align command still does the alignment
and moves the structure but does not show the movement.
Is there an easy way to just calculate the all atom RMSD between two
already superposed structures in pymol or any other programm?
Thanks in advance!
Johannes
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Johannes Sommerkamp
Ruhr-Universität Bochum
AG Röntgenstrukturanalyse an Proteinen, LS Biophysik, ND04/396
Universitätsstraße 150
44801 Bochum
Tel: +49-(0)234/32-25754
