Dear Murpholino, 

there is a couple of articles addressing specifically this issue : 

Urzhumtsev, A., Afonine, P.V., Lunin, V.Y., Terwilliger, T.C., Adams, P.D. 
(2014) " Metrics for comparison of crystallographic maps ". Acta Cryst., D70 , 
2593-2606 
Urzhumtseva, L., Urzhumtsev, A. (2016) "COMPaRS: stand-alone program for map 
comparison using quantile rang scaling". J. Appl. Cryst., 49 , 2270-2275. 

Best regards, 

Sacha Urzhumtsev 

----- Le 12 Mai 20, à 0:18, Murpholino Peligro <murpholi...@gmail.com> a écrit 
: 

> I want to compare electron density features of map A from protein A and map B
> from protein B...

> Because each map has a different rmsd level...

> ...what is the best way to compare electron density between maps?

> Is there a way to normalize maps or something like that?

> Thanks

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