Hi,

We have implemented a method for comparing cryoEM maps which works by scaling 
the maps based on resolution dependent amplitude fall-offs. The approach is 
discussed here:
Joseph AP, Lagerstedt I, Jakobi A, Burnley T, Patwardhan A, Topf M, Winn M. 
Comparing Cryo-EM Reconstructions and Validating Atomic Model Fit Using 
Difference Maps. J Chem Inf Model. 2020 Feb 11. doi: 10.1021/acs.jcim.9b01103
The method is implemented as a task (TEMPy:Diffmap) in the CCP-EM software 
suite. The latests nighly builds also include options for global or local 
scaling of the maps. The global scaling option might be of interest to you if 
you are looking to scale and compare xtal maps.

Regards,
Agnel


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