The hard bit is to get the rmsd's into the B-factor column, but it shouldn't stretch you too much, Harry ;-
There is ProtSkin on the web which does something similar with sequence alignments. Sent from ProtonMail mobile -------- Original Message -------- On 26 May 2021, 16:28, Harry Powell - CCP4BB wrote: > Hi Jurgen > > NMR structures don’t appear to have B_factors, or at least not meaningful > ones (e.g. in 2kv5 they’re all 0.00…). > > thanks for the response, though > > Harry > >> On 26 May 2021, at 16:21, Jurgen Bosch <jxb...@case.edu> wrote: >> >> How about color by B-factor and look for the cold areas and hot areas? >> Jürgen >> >>> On May 26, 2021, at 11:04 AM, Harry Powell - CCP4BB >>> <0000193323b1e616-dmarc-requ...@jiscmail.ac.uk> wrote: >>> >>> Hi >>> >>> Given that there are plenty of people on this BB who are structural >>> biologists rather than “just” crystallographers, I thought someone here >>> might be able to help. >>> >>> If I have a structure in the PDB (e.g. 2kv5) that is an ensemble of >>> structures that fit the NOEs, is there a tool available that will give me >>> some idea about the bits of the structure that do not vary much (“rigid”) >>> and the bits that are all over the place (“flexible”)? >>> >>> Would superpose or gesamt be a good tool for this? Ideally I’d like >>> something that could add a figure to the B columns in a PDB file so I could >>> see something in QTMG (or PyMol if forced…) or do other useful things with >>> the information. >>> >>> Harry >>> ######################################################################## >>> >>> To unsubscribe from the CCP4BB list, click the following link: >>> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 >>> >>> This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing >>> list hosted by www.jiscmail.ac.uk, terms & conditions are available at >>> https://www.jiscmail.ac.uk/policyandsecurity/ >> >> ######################################################################## >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 >> >> This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing >> list hosted by www.jiscmail.ac.uk, terms & conditions are available at >> https://www.jiscmail.ac.uk/policyandsecurity/ > > ######################################################################## > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing > list hosted by www.jiscmail.ac.uk, terms & conditions are available at > https://www.jiscmail.ac.uk/policyandsecurity/ ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
