Hi Reza, Could you use MolProbity (also from within Phenix), which will give you statistics about Ramachandran/rotamer outliers, clash score etc? Besides, maybe ModFOLD? (https://www.reading.ac.uk/bioinf/ModFOLD/) Which journal, if I may ask?
Best, Jonas -- Jonas Weidenhausen PhD Student AG Sinning BZH Heidelberg University, room: 524 INF 328, 69120 Heidelberg Phone: +49 6221 54-4786 jonas.weidenhau...@bzh.uni-heidelberg.de<mailto:jonas.weidenhau...@bzh.uni-heidelberg.de> On 20. Dec 2021, at 17:10, Reza Khayat <rkha...@ccny.cuny.edu<mailto:rkha...@ccny.cuny.edu>> wrote: Hi, Can anyone suggest how to validate a predicted structure? Something similar to wwPDB validation without the need for refinement statistics. I realize this is a strange question given that the geometry of the model is anticipated to be fine if the structure was predicted by a server that minimizes the geometry to improve its statistics. Nonetheless, the journal has asked me for such a report. Thanks. Best wishes, Reza Reza Khayat, PhD Associate Professor City College of New York Department of Chemistry and Biochemistry New York, NY 10031 ________________________________ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
