Dear Reza,
You may run it through the Moleprobity server for validation:
http://molprobity.manchester.ac.uk/

Good luck, Anat.

From: CCP4 bulletin board <CCP4BB@jiscmail.ac.uk> On Behalf Of Reza Khayat
Sent: Monday, 20 December 2021 18:10
To: CCP4BB@jiscmail.ac.uk
Subject: [ccp4bb] Validation of structure prediction


​Hi,

Can anyone suggest how to validate a predicted structure? Something similar to 
wwPDB validation without the need for refinement statistics. I realize this is 
a strange question given that the geometry of the model is anticipated to be 
fine if the structure was predicted by a server that minimizes the geometry to 
improve its statistics. Nonetheless, the journal has asked me for such a 
report. Thanks.

Best wishes,

Reza


Reza Khayat, PhD
Associate Professor
City College of New York
Department of Chemistry and Biochemistry
New York, NY 10031

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