Did you check anomalous difference peaks? They would show zn very clearly.

On Sat, 2 Jul 2022 at 08:08, Sayan Saha <ssaha43...@gmail.com> wrote:

> Dear all,
> As suggested by most people, we modeled   Zn2+   ions coordinated with
> three water molecules.
> Thanks for everyone’s response.
>
> With best regards,
> Sayan Saha
>
> On Fri, Jul 1, 2022 at 8:04 PM Jon Cooper <jon.b.coo...@protonmail.com>
> wrote:
>
>> Hello, I wonder if it is disorder i.e. alternative conformations of the
>> Asp and flexible Lys.
>>
>> Do let us know your final interpretation as we don't often, or indeed
>> ever, hear the final outcome of these mystery density competitions and I
>> would love to learn more from them.
>>
>> Cheers, Jon.C.
>>
>>
>> Sent from ProtonMail mobile
>>
>>
>>
>> -------- Original Message --------
>> On 30 Jun 2022, 08:03, Sayan Saha < ssaha43...@gmail.com> wrote:
>>
>>
>> Dear All,
>>
>> I am trying to refine a protein structure. I observed an additional
>> electron density (Figures attached) connected to the aspartate residue.
>>
>> Any suggestion in this regard would be appreciated.
>>
>> With best regards,
>> Sayan Saha.
>>
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