Agreed, it doesn't look like a zinc site, or indeed any metal site, with all 
those basic residues around it, but just being a bad loser ;-0 Cheers, Jon.C.

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-------- Original Message --------
On 2 Jul 2022, 08:14, Eleanor Dodson wrote:

> Did you check anomalous difference peaks? They would show zn very clearly.
>
> On Sat, 2 Jul 2022 at 08:08, Sayan Saha <ssaha43...@gmail.com> wrote:
>
>> Dear all,
>> As suggested by most people, we modeled Zn2+ ions coordinated with three 
>> water molecules.
>> Thanks for everyone’s response.
>>
>> With best regards,
>> Sayan Saha
>>
>> On Fri, Jul 1, 2022 at 8:04 PM Jon Cooper <jon.b.coo...@protonmail.com> 
>> wrote:
>>
>>> Hello, I wonder if it is disorder i.e. alternative conformations of the Asp 
>>> and flexible Lys.
>>>
>>> Do let us know your final interpretation as we don't often, or indeed ever, 
>>> hear the final outcome of these mystery density competitions and I would 
>>> love to learn more from them.
>>>
>>> Cheers, Jon.C.
>>>
>>> Sent from ProtonMail mobile
>>>
>>> -------- Original Message --------
>>> On 30 Jun 2022, 08:03, Sayan Saha < ssaha43...@gmail.com> wrote:
>>>
>>>> Dear All,
>>>>
>>>> I am trying to refine a protein structure. I observed an additional 
>>>> electron density (Figures attached) connected to the aspartate residue.
>>>>
>>>> Any suggestion in this regard would be appreciated.
>>>>
>>>> With best regards,
>>>> Sayan Saha.
>>>>
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