I stand corrected and have learnt a new trick, thanks Jose! Note jose’s reply has a typo it is https://models.rcsb.org<https://models.rcsb.org/> not https://modes.rcsb.org<https://modes.rcsb.org/>
loading the page https://models.rcsb.org<https://models.rcsb.org/> on its own gives a nice rather nice listing of the api… Regards Gary -------------------------------------------------------------------- Dr Gary S Thompson NMR Facility Manager CCPN CoI & Working Group Member Wellcome Trust Biomolecular NMR Facility School of Biosciences, Faculty of Natural Sciences University of Kent, Canterbury, Kent, England, CT2 7NZ tel: 01227 82 7117 e-mail: g.s.thomp...@kent.ac.uk<mailto:g.s.thomp...@kent.ac.uk> orchid: orcid.org/0000-0001-9399-7636<https://urldefense.com/v3/__http:/orcid.org/0000-0001-9399-7636__;!!JFdNOqOXpB6UZW0!5pL_seJsFx0GRaDgwaLL0h3tmVktbehHKv07ZEZEcqZMKbC_s464UgFam-zmCFabTW0x$> -------------------------------------------------------------------- From: CCP4 bulletin board <CCP4BB@JISCMAIL.AC.UK> on behalf of Jose Duarte <0000ac8ce2e7d24d-dmarc-requ...@jiscmail.ac.uk> Date: Thursday, 7 September 2023 at 18:03 To: CCP4BB@JISCMAIL.AC.UK <CCP4BB@JISCMAIL.AC.UK> Subject: Re: [ccp4bb] Downloading individual chains from the PDB CAUTION: This email originated from outside of the organisation. Do not click links or open attachments unless you recognise the sender and know the content is safe. Gary pointed me to a typo in the API reference link (thanks!). This is the correct one: https://models.rcsb.org<https://models.rcsb.org/> On Thu, 7 Sept 2023 at 09:34, Jose Duarte <jose.dua...@rcsb.org<mailto:jose.dua...@rcsb.org>> wrote: The ModelServer API is your friend. See the APIs help page at https://www.rcsb.org/docs/programmatic-access/web-services-overview and the full ModelServer API reference at https://modes.rcsb.org<https://modes.rcsb.org/> An example that retrieves chain A of 2trx (in CIF format): https://models.rcsb.org/v1/2trx/atoms?label_asym_id=A&encoding=cif©_all_categories=false&download=false I'll also take this opportunity to advertise the upcoming RCSB PDB APIs crash course: https://iqb.rutgers.edu/node/279 . Though the course will mostly deal with other APIs (Data and Search). Hope this helps Jose On Thu, 7 Sept 2023 at 09:17, Whitley, Matthew (NIH/NCI) [C] <0000a8ed4e9d4a1a-dmarc-requ...@jiscmail.ac.uk<mailto:0000a8ed4e9d4a1a-dmarc-requ...@jiscmail.ac.uk>> wrote: Hello all, I have a script I use from time to time to batch download multiple PDB files using curl. I have certain use cases in which I only need a specific chain from a PDB file that contains multiple chains. At present, I download the complete PDB file and then use pdbtools to pull out the specific chain I want. Does anyone know a way to batch download specific chains from the PDB? I reviewed the “File Download Services” page at the RCSB PDB, but I didn’t find anything about downloading specific chains, so I don’t know if this functionality exists. Thanks for your suggestions. Matthew ________________________________ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 ________________________________ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB&A=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
