On Wed, 2007-05-02 at 10:11 +0530, sushil ronghe wrote: > Dear all, > > From last few days i am working with qsar package of cdk. > I have builded the jar from source. > while doing so I am getting few error. > Previously (when i was using the pre builded jar) this error was not > their. > 1) > > ////////////////////////////////////////////////////////////////////////////////////////////////////////////////// > Exception in thread "AWT-EventQueue-0" java.lang.NoClassDefFoundError: > Jama/Matrix > at > org.openscience.cdk.qsar.descriptors.molecular.BCUTDescriptor.calculate(BCUTDescriptor.java:295) > at Data.QSARCal.calculate(QSARCal.java:75) > > /////////////////////////////////////////////////////////// > > 2) I think this class is removed in the latest version. > java.lang.ClassNotFoundException: > org.openscience.cdk.qsar.descriptors.molecular.ConnectivityOrderOneDescriptor > at java.net.URLClassLoader$1.run(URLClassLoader.java :200) > > /////////////////////////////////////////////////////////////// > > 3) again jama/Matrix error > > Exception in thread "AWT-EventQueue-0" java.lang.NoClassDefFoundError: > Jama/Matrix > org.openscience.cdk.qsar.descriptors.molecular.MomentOfInertiaDescriptor.calculate(MomentOfInertiaDescriptor.java:201) > at Data.QSARCal.calculate(QSARCal.java:75) > at CWin.CView.OnQsar(CView.java:552) > ///////////////////////////////////////////////////////////////////// > > 4) i think this class is also removed > java.lang.ClassNotFoundException: > org.openscience.cdk.qsar.descriptors.molecular.ConnectivityOrderZeroDescriptor > at java.net.URLClassLoader$1.run(URLClassLoader.java :200) > also ConnectivityOrderOneDescriptor is giving the same error. > ////////////////////////////////////////////////////////////////////// >
All these look like a classpath or jar building problem > 5) AromaticAtom and AromaticBond Count descriptor are coming zero > always. This probably depends on prior perception? ------------------------------------------------------------------- Rajarshi Guha <[EMAIL PROTECTED]> GPG Fingerprint: 0CCA 8EE2 2EEB 25E2 AB04 06F7 1BB9 E634 9B87 56EE ------------------------------------------------------------------- A committee is a life form with six or more legs and no brain. -- Lazarus Long, "Time Enough For Love" ------------------------------------------------------------------------- This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ Cdk-user mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/cdk-user
