Dear CDK users, I am using cdk-1.3.8.jar + cdk-jchempaint-16.jar. When I render a molecule, only one atom is rendered (see attachment). Can anybody provide hint about what combination of CDK and cdk-jchempaint is stable or maybe my code is not adequate?
Thanks in advance. -- With best regards, Dmitry
<<attachment: sample.jpg>>
BufferedImage image = new BufferedImage(800, 600, BufferedImage.TYPE_INT_RGB);
IMolecule molecule = MoleculeFactory.makeAdenine();
StructureDiagramGenerator sdg = new StructureDiagramGenerator();
sdg.setMolecule(molecule);
sdg.generateCoordinates();
molecule = sdg.getMolecule();
Graphics2D graphics = image.createGraphics();
graphics.setColor(Color.WHITE);
graphics.fillRect(0, 0, image.getWidth(), image.getHeight());
IRenderer<IAtomContainer> chemicalMoleculeRenderer = new
AtomContainerRenderer(Arrays.asList(new BasicSceneGenerator(),
new BasicBondGenerator(), new
BasicAtomGenerator()), new AWTFontManager());
Rectangle imageRect = chemicalMoleculeRenderer.paint(molecule, new
AWTDrawVisitor(graphics));
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