On Tue, Mar 13, 2012 at 1:28 PM, Jean-Marc Nuzillard
<[email protected]> wrote:
> The origin of my previous question to the cdk-list is that
> I made a confusion between MDLWriter (does not write molecule properties)
> and SDFWriter (really does write molecule properties).

The link are the ioformats... each format has an associated reader and
writer. It is best to start from there.

> As a matter of fact, it is no fully intuitive to read a multiple molecule
> SD file with an IteratingMDLReader and to write it with an SDFWriter.

This is already fixed in master:

https://github.com/cdk/cdk/tree/master/src/main/org/openscience/cdk/io/iterator

but since CDK 1.4 is supposed to be API stable, it is not applied to
that branch.

Egon

-- 
Dr E.L. Willighagen
Postdoctoral Researcher
Department of Bioinformatics - BiGCaT
Maastricht University (http://www.bigcat.unimaas.nl/)
Homepage: http://egonw.github.com/
LinkedIn: http://se.linkedin.com/in/egonw
Blog: http://chem-bla-ics.blogspot.com/
PubList: http://www.citeulike.org/user/egonw/tag/papers

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