Thanks. Thought this was familiar!

On 24/11/2016 15:35, John M wrote:
Hi Tim,

You've already used it... see message from 28 Sep. Documentation is out of date (MoleculeSet was deleted) but essentially - http://cdk.github.io/cdk/1.5/docs/api/index.html?org/openscience/cdk/graph/ConnectivityChecker.html

John

On 24 November 2016 at 15:04, Tim Dudgeon <[email protected] <mailto:[email protected]>> wrote:

    I'm sure this is easy, but I can't find it.

    How to break a molecule onto its fragments when it is composed of
    multiple disconnected parts. e.g. the main molecule and its salt.
    I was expecting to find something like a

    IAtomContainer[] getFragments();

    method in IAtomContainer.

    Tim


    
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