I'm just about to set up another server, and I'm seeing slight differences in 
the two installs.  In my old install, I have these being referenced:

C:\CFusionMX\runtime\..\lib\cfmx-j2ee.jar
C:\CFusionMX\runtime\..\lib\jce1_2_1.jar
C:\CFusionMX\runtime\..\lib\local_policy.jar

There are others...but the list of the JVM path is much larger in the older 
install than the newer.  Is it because it's a clean install?  The older one 
went from CF5 to CFMX 6 to CFMX 6 Updater to CFMX 6.1.  The new one went 
straight from CFMX 6 to CFMX 6.1.

Normally I don't look at this sort of stuff, but the reason why I started 
peeking around is because the JVM Arguments on the old box does not work on the 
new box (it gives an error "1" and fails to initiate the service).  Here's the 
argument:

-server -Dsun.io.useCanonCaches=false 
-Xbootclasspath/a:"{application.home}/../lib/webchartsJava2D.jar" 
-XX:MaxPermSize=128m -XX:PermSize=64m -XX:+UseConcMarkSweepGC -XX:NewSize=48m 
-Djavax.xml.parsers.SAXParserFactory=com.macromedia.crimson.jaxp.SAXParserFactoryImpl
 
-Djavax.xml.parsers.DocumentBuilderFactory=com.macromedia.crimson.jaxp.DocumentBuilderFactoryImpl

The one on the new box is the default one:

-server -Dsun.io.useCanonCaches=false 
-Xbootclasspath/a:"{application.home}/../lib/webchartsJava2D.jar" 
-XX:MaxPermSize=128m -XX:+UseParallelGC

I'm noticing other subtle differences...like on the page where you enter the 
argument, the new box's page is only two lines high.  On the old box, it's 6 
high.

Any thoughts?

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