I can't speak for MySQL, but in MSSQL, every query (not just prepared 
statements) is processed into a Query Plan before processing.  The server then 
caches as many of these QPs as possible, so that repeated calls to the same 
'query definition' do not have the overhead of having to re-generate the QP; 
they just execute in the pre-defined 'most efficient way'.  The difference in 
performance is, therefore, likely to be greater the more complex the query is.

Whether the same holds true for MySQL, I have no idea. 

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