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dimuthuupe pushed a change to branch staging
in repository https://gitbox.apache.org/repos/asf/airavata.git.
from c1b12e5 Adding missing path separator for retry counter
add b64f33b implementation of DataParsingTask, CatalogEntry, and
CatalogUtil
add 1447321 Catalog Graph implementation with Dijkstra shortest path
algorithm
add e0486d4 Parser workflow manager and parser request implementation
add 4ff6b34 distribution of parser workflow manager
add 9b40364 changed the way of getting shortest path entries considering
application and multiple operations
add 8a4eb0a avoid source vertex self loops
new 2af9090 Merge pull request #206 from Lahiru-J/staging
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repository and will be described in separate emails. The revisions
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Summary of changes:
modules/airavata-helix/helix-distribution/pom.xml | 16 ++
...bin-assembly.xml => parser-wm-bin-assembly.xml} | 7 +-
.../bin/parser-wm-daemon.sh} | 8 +-
.../bin/pre-wm.sh => parser-wm/bin/parser-wm.sh} | 6 +-
.../resources/{pre-wm => parser-wm}/bin/setenv.sh | 4 +-
.../conf/airavata-server.properties | 15 +-
.../src/main/resources/parser-wm/conf}/logback.xml | 0
.../helix/impl/participant/GlobalParticipant.java | 3 +-
.../helix/impl/task/parsing/CatalogEntry.java | 249 ++++++++++++++++++++
.../helix/impl/task/parsing/CatalogGraph.java | 78 +++++++
.../helix/impl/task/parsing/CatalogUtil.java | 105 +++++++++
.../helix/impl/task/parsing/DataParsingTask.java | 206 ++++++++++++++++
.../helix/impl/task/parsing/ParserRequest.java | 84 +++++++
.../parsing/shortestpath/DijkstraShortestPath.java | 258 +++++++++++++++++++++
.../task/parsing/shortestpath/DirectedGraph.java | 73 ++++++
.../helix/impl/task/parsing/shortestpath/Edge.java | 64 +++++
.../impl/task/parsing/shortestpath/Vertex.java} | 61 ++---
.../helix/impl/workflow/ParserWorkflowManager.java | 121 ++++++++++
.../src/main/resources/airavata-server.properties | 8 +-
19 files changed, 1316 insertions(+), 50 deletions(-)
copy
modules/airavata-helix/helix-distribution/src/main/assembly/{controller-bin-assembly.xml
=> parser-wm-bin-assembly.xml} (93%)
copy
modules/airavata-helix/helix-distribution/src/main/resources/{controller/bin/controller-daemon.sh
=> parser-wm/bin/parser-wm-daemon.sh} (90%)
copy
modules/airavata-helix/helix-distribution/src/main/resources/{pre-wm/bin/pre-wm.sh
=> parser-wm/bin/parser-wm.sh} (90%)
copy modules/airavata-helix/helix-distribution/src/main/resources/{pre-wm =>
parser-wm}/bin/setenv.sh (99%)
mode change 100755 => 100644
copy modules/airavata-helix/helix-distribution/src/main/resources/{pre-wm =>
parser-wm}/conf/airavata-server.properties (83%)
copy modules/{job-monitor/real-time-monitor/src/main/resources =>
airavata-helix/helix-distribution/src/main/resources/parser-wm/conf}/logback.xml
(100%)
create mode 100644
modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/parsing/CatalogEntry.java
create mode 100644
modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/parsing/CatalogGraph.java
create mode 100644
modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/parsing/CatalogUtil.java
create mode 100644
modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/parsing/DataParsingTask.java
create mode 100644
modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/parsing/ParserRequest.java
create mode 100644
modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/parsing/shortestpath/DijkstraShortestPath.java
create mode 100644
modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/parsing/shortestpath/DirectedGraph.java
create mode 100644
modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/parsing/shortestpath/Edge.java
copy
modules/{registry/registry-core/src/main/java/org/apache/airavata/registry/core/workflow/catalog/model/Edge_PK.java
=>
airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/parsing/shortestpath/Vertex.java}
(51%)
create mode 100644
modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/workflow/ParserWorkflowManager.java
