See 
<https://builds.apache.org/job/beam_PerformanceTests_Python/832/display/redirect?page=changes>

Changes:

[chamikara] [BEAM-3060] Support for Perfkit execution of file-based-io-tests on 
HDFS

------------------------------------------
Started by timer
[EnvInject] - Loading node environment variables.
Building remotely on beam7 (beam) in workspace 
<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/>
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/apache/beam.git # timeout=10
Fetching upstream changes from https://github.com/apache/beam.git
 > git --version # timeout=10
 > git fetch --tags --progress https://github.com/apache/beam.git 
 > +refs/heads/*:refs/remotes/origin/* 
 > +refs/pull/${ghprbPullId}/*:refs/remotes/origin/pr/${ghprbPullId}/*
 > git rev-parse origin/master^{commit} # timeout=10
Checking out Revision ad82ac140161cd5d88c972c88a1c8168cf26ff1c (origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f ad82ac140161cd5d88c972c88a1c8168cf26ff1c
Commit message: "[BEAM-3060] Support for Perfkit execution of 
file-based-io-tests on HDFS cluster. (#4401)"
 > git rev-list 3c6899c001b28ff98db461df8b712c691403b67d # timeout=10
Cleaning workspace
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -fdx # timeout=10
[EnvInject] - Executing scripts and injecting environment variables after the 
SCM step.
[EnvInject] - Injecting as environment variables the properties content 
SPARK_LOCAL_IP=127.0.0.1

[EnvInject] - Variables injected successfully.
[beam_PerformanceTests_Python] $ /bin/bash -xe 
/tmp/jenkins3446943244834405499.sh
+ rm -rf PerfKitBenchmarker
[beam_PerformanceTests_Python] $ /bin/bash -xe 
/tmp/jenkins1201958968145959151.sh
+ rm -rf .env
[beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins264380244794727142.sh
+ virtualenv .env --system-site-packages
New python executable in 
<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/.env/bin/python>
Installing setuptools, pip, wheel...done.
[beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins354247159521744660.sh
+ git clone https://github.com/GoogleCloudPlatform/PerfKitBenchmarker.git
Cloning into 'PerfKitBenchmarker'...
[beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins954011160583374118.sh
+ .env/bin/pip install -r PerfKitBenchmarker/requirements.txt
Requirement already satisfied: absl-py in 
/home/jenkins/.local/lib/python2.7/site-packages (from -r 
PerfKitBenchmarker/requirements.txt (line 14))
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/usr/local/lib/python2.7/dist-packages (from -r 
PerfKitBenchmarker/requirements.txt (line 15))
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(from -r PerfKitBenchmarker/requirements.txt (line 16))
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/home/jenkins/.local/lib/python2.7/site-packages (from -r 
PerfKitBenchmarker/requirements.txt (line 17))
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PerfKitBenchmarker/requirements.txt (line 20))
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PerfKitBenchmarker/requirements.txt (line 21))
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requests-ntlm>=0.3.0->pywinrm->-r PerfKitBenchmarker/requirements.txt (line 25))
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requests-ntlm>=0.3.0->pywinrm->-r PerfKitBenchmarker/requirements.txt (line 25))
Requirement already satisfied: idna<2.6,>=2.5 in 
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requests>=2.9.1->pywinrm->-r PerfKitBenchmarker/requirements.txt (line 25))
Requirement already satisfied: urllib3<1.22,>=1.21.1 in 
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requests>=2.9.1->pywinrm->-r PerfKitBenchmarker/requirements.txt (line 25))
Requirement already satisfied: chardet<3.1.0,>=3.0.2 in 
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requests>=2.9.1->pywinrm->-r PerfKitBenchmarker/requirements.txt (line 25))
Requirement already satisfied: certifi>=2017.4.17 in 
/home/jenkins/.local/lib/python2.7/site-packages (from 
requests>=2.9.1->pywinrm->-r PerfKitBenchmarker/requirements.txt (line 25))
Requirement already satisfied: cffi>=1.7; platform_python_implementation != 
"PyPy" in /home/jenkins/.local/lib/python2.7/site-packages (from 
cryptography>=1.3->requests-ntlm>=0.3.0->pywinrm->-r 
PerfKitBenchmarker/requirements.txt (line 25))
Requirement already satisfied: enum34; python_version < "3" in 
/home/jenkins/.local/lib/python2.7/site-packages (from 
cryptography>=1.3->requests-ntlm>=0.3.0->pywinrm->-r 
PerfKitBenchmarker/requirements.txt (line 25))
Requirement already satisfied: asn1crypto>=0.21.0 in 
/home/jenkins/.local/lib/python2.7/site-packages (from 
cryptography>=1.3->requests-ntlm>=0.3.0->pywinrm->-r 
PerfKitBenchmarker/requirements.txt (line 25))
Requirement already satisfied: ipaddress; python_version < "3" in 
/usr/local/lib/python2.7/dist-packages (from 
cryptography>=1.3->requests-ntlm>=0.3.0->pywinrm->-r 
PerfKitBenchmarker/requirements.txt (line 25))
Requirement already satisfied: pycparser in 
/home/jenkins/.local/lib/python2.7/site-packages (from cffi>=1.7; 
platform_python_implementation != 
"PyPy"->cryptography>=1.3->requests-ntlm>=0.3.0->pywinrm->-r 
PerfKitBenchmarker/requirements.txt (line 25))
[beam_PerformanceTests_Python] $ /bin/bash -xe 
/tmp/jenkins9175755343204911643.sh
+ .env/bin/pip install -e 'src/sdks/python/[gcp,test]'
Obtaining 
file://<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/src/sdks/python>
Requirement already satisfied: avro<2.0.0,>=1.8.1 in 
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/home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev0)
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in /home/jenkins/.local/lib/python2.7/site-packages (from 
apache-beam==2.3.0.dev0)
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(from protobuf<4,>=3.5.0.post1->apache-beam==2.3.0.dev0)
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google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev0)
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google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev0)
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fasteners>=0.14->google-apitools<=0.5.20,>=0.5.18->apache-beam==2.3.0.dev0)
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google-cloud-core<0.26dev,>=0.25.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev0)
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gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev0)
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Requirement already satisfied: chardet<3.1.0,>=3.0.2 in 
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requests<3.0dev,>=2.13.0->google-gax<0.16dev,>=0.15.7->gapic-google-cloud-pubsub-v1<0.16dev,>=0.15.0->google-cloud-pubsub==0.26.0->apache-beam==2.3.0.dev0)
Requirement already satisfied: certifi>=2017.4.17 in 
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Installing collected packages: apache-beam
  Found existing installation: apache-beam 2.3.0.dev0
    Not uninstalling apache-beam at 
<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/src/sdks/python,>
 outside environment 
<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/.env>
  Running setup.py develop for apache-beam
Successfully installed apache-beam
[beam_PerformanceTests_Python] $ /bin/bash -xe 
/tmp/jenkins3724021084561376564.sh
+ .env/bin/python PerfKitBenchmarker/pkb.py --project=apache-beam-testing 
--dpb_log_level=INFO --maven_binary=/home/jenkins/tools/maven/latest/bin/mvn 
--bigquery_table=beam_performance.pkb_results --official=true --beam_sdk=python 
--benchmarks=beam_integration_benchmark 
--beam_it_args=--project=apache-beam-testing,--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it,--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it,--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output
2018-01-25 06:00:40,810 9698887e MainThread INFO     Verbose logging to: 
/tmp/perfkitbenchmarker/runs/9698887e/pkb.log
2018-01-25 06:00:40,810 9698887e MainThread INFO     PerfKitBenchmarker 
version: v1.12.0-259-g5a6cff9
2018-01-25 06:00:40,811 9698887e MainThread INFO     Flag values:
--beam_sdk=python
--beam_it_args=--project=apache-beam-testing,--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it,--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it,--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output
--maven_binary=/home/jenkins/tools/maven/latest/bin/mvn
--project=apache-beam-testing
--bigquery_table=beam_performance.pkb_results
--official
--dpb_log_level=INFO
--benchmarks=beam_integration_benchmark
2018-01-25 06:00:41,236 9698887e MainThread WARNING  The key "flags" was not in 
the default config, but was in user overrides. This may indicate a typo.
2018-01-25 06:00:41,236 9698887e MainThread INFO     Initializing the edw 
service decoder
2018-01-25 06:00:41,378 9698887e MainThread beam_integration_benchmark(1/1) 
INFO     Provisioning resources for benchmark beam_integration_benchmark
2018-01-25 06:00:41,381 9698887e MainThread beam_integration_benchmark(1/1) 
INFO     Preparing benchmark beam_integration_benchmark
2018-01-25 06:00:41,382 9698887e MainThread beam_integration_benchmark(1/1) 
INFO     Running: git clone https://github.com/apache/beam.git
2018-01-25 06:00:47,397 9698887e MainThread beam_integration_benchmark(1/1) 
INFO     Running: /home/jenkins/tools/maven/latest/bin/mvn clean install 
-DskipTests -Dcheckstyle.skip=true -Pdataflow-runner
2018-01-25 06:07:58,296 9698887e MainThread beam_integration_benchmark(1/1) 
INFO     Running benchmark beam_integration_benchmark
2018-01-25 06:07:58,309 9698887e MainThread beam_integration_benchmark(1/1) 
INFO     Running: python setup.py nosetests 
--tests=apache_beam.examples.wordcount_it_test --attr=IT 
--test-pipeline-options="--project=apache-beam-testing" 
"--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it" 
"--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it" 
"--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output" 
--runner=TestDataflowRunner 
--sdk_location=/tmp/perfkitbenchmarker/runs/9698887e/beam/sdks/python/target/apache-beam-2.3.0.dev0.tar.gz
2018-01-25 06:17:58,314 9698887e Thread-4 ERROR    IssueCommand timed out after 
600 seconds. Killing command "python setup.py nosetests 
--tests=apache_beam.examples.wordcount_it_test --attr=IT 
--test-pipeline-options="--project=apache-beam-testing" 
"--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it" 
"--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it" 
"--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output" 
--runner=TestDataflowRunner 
--sdk_location=/tmp/perfkitbenchmarker/runs/9698887e/beam/sdks/python/target/apache-beam-2.3.0.dev0.tar.gz".
2018-01-25 06:17:58,319 9698887e MainThread beam_integration_benchmark(1/1) 
INFO     Ran python setup.py nosetests 
--tests=apache_beam.examples.wordcount_it_test --attr=IT 
--test-pipeline-options="--project=apache-beam-testing" 
"--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it" 
"--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it" 
"--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output" 
--runner=TestDataflowRunner 
--sdk_location=/tmp/perfkitbenchmarker/runs/9698887e/beam/sdks/python/target/apache-beam-2.3.0.dev0.tar.gz.
 Got return code (-9).
STDOUT: running nosetests
running egg_info
writing requirements to apache_beam.egg-info/requires.txt
writing apache_beam.egg-info/PKG-INFO
writing top-level names to apache_beam.egg-info/top_level.txt
writing dependency_links to apache_beam.egg-info/dependency_links.txt
writing entry points to apache_beam.egg-info/entry_points.txt
reading manifest file 'apache_beam.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'apache_beam.egg-info/SOURCES.txt'

STDERR: /usr/local/lib/python2.7/dist-packages/setuptools/dist.py:355: 
UserWarning: Normalizing '2.3.0.dev' to '2.3.0.dev0'
  normalized_version,
test_wordcount_fnapi_it (apache_beam.examples.wordcount_it_test.WordCountIT) 
... 
/tmp/perfkitbenchmarker/runs/9698887e/beam/sdks/python/apache_beam/io/gcp/gcsio.py:160:
 DeprecationWarning: object() takes no parameters
  super(GcsIO, cls).__new__(cls, storage_client))
/tmp/perfkitbenchmarker/runs/9698887e/beam/sdks/python/apache_beam/coders/typecoders.py:133:
 UserWarning: Using fallback coder for typehint: Any.
  warnings.warn('Using fallback coder for typehint: %r.' % typehint)
ok
test_wordcount_it (apache_beam.examples.wordcount_it_test.WordCountIT) ... 
/tmp/perfkitbenchmarker/runs/9698887e/beam/sdks/python/apache_beam/coders/typecoders.py:133:
 UserWarning: Using fallback coder for typehint: <type 'NoneType'>.
  warnings.warn('Using fallback coder for typehint: %r.' % typehint)

2018-01-25 06:17:58,319 9698887e MainThread beam_integration_benchmark(1/1) 
ERROR    Error during benchmark beam_integration_benchmark
Traceback (most recent call last):
  File 
"<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py";,>
 line 601, in RunBenchmark
    DoRunPhase(spec, collector, detailed_timer)
  File 
"<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py";,>
 line 504, in DoRunPhase
    samples = spec.BenchmarkRun(spec)
  File 
"<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/linux_benchmarks/beam_integration_benchmark.py";,>
 line 159, in Run
    job_type=job_type)
  File 
"<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/providers/gcp/gcp_dpb_dataflow.py";,>
 line 90, in SubmitJob
    assert retcode == 0, "Integration Test Failed."
AssertionError: Integration Test Failed.
2018-01-25 06:17:58,320 9698887e MainThread beam_integration_benchmark(1/1) 
INFO     Cleaning up benchmark beam_integration_benchmark
2018-01-25 06:17:58,322 9698887e MainThread beam_integration_benchmark(1/1) 
ERROR    Benchmark 1/1 beam_integration_benchmark (UID: 
beam_integration_benchmark0) failed. Execution will continue.
2018-01-25 06:17:58,348 9698887e MainThread INFO     Benchmark run statuses:
---------------------------------------------------------------
Name                        UID                          Status
---------------------------------------------------------------
beam_integration_benchmark  beam_integration_benchmark0  FAILED
---------------------------------------------------------------
Success rate: 0.00% (0/1)
2018-01-25 06:17:58,349 9698887e MainThread INFO     Complete logs can be found 
at: /tmp/perfkitbenchmarker/runs/9698887e/pkb.log
2018-01-25 06:17:58,349 9698887e MainThread INFO     Completion statuses can be 
found at: /tmp/perfkitbenchmarker/runs/9698887e/completion_statuses.json
Build step 'Execute shell' marked build as failure
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