See <https://builds.apache.org/job/beam_PerformanceTests_Python/835/display/redirect?page=changes>
Changes: [shashank] fix serialization error in BigQueryIO's DynamicDestinations [shashank] correct side input check in BigQueryIO DynamicDestination for pull [coheigea] BEAM-3533 - Replace hard-coded UTF-8 Strings [jbonofre] [BEAM-3466] Remove JDK 7 references in Jenkins ------------------------------------------ Started by timer [EnvInject] - Loading node environment variables. Building remotely on beam3 (beam) in workspace <https://builds.apache.org/job/beam_PerformanceTests_Python/ws/> > git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/apache/beam.git # timeout=10 Fetching upstream changes from https://github.com/apache/beam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/apache/beam.git > +refs/heads/*:refs/remotes/origin/* > +refs/pull/${ghprbPullId}/*:refs/remotes/origin/pr/${ghprbPullId}/* > git rev-parse origin/master^{commit} # timeout=10 Checking out Revision 0f554fd51414381646c32b36f6f87a14adc0fad8 (origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 0f554fd51414381646c32b36f6f87a14adc0fad8 Commit message: "Merge pull request #4417 from shashank64/master" > git rev-list c07a43ee2d4d81de15d78f8ec5a52816248d1afe # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 [EnvInject] - Executing scripts and injecting environment variables after the SCM step. [EnvInject] - Injecting as environment variables the properties content SPARK_LOCAL_IP=127.0.0.1 [EnvInject] - Variables injected successfully. [beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins8491686870287645687.sh + rm -rf PerfKitBenchmarker [beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins3740577391775067095.sh + rm -rf .env [beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins3492718838635065982.sh + virtualenv .env --system-site-packages New python executable in .env/bin/python Installing setuptools, pip...done. [beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins4433122496208090018.sh + git clone https://github.com/GoogleCloudPlatform/PerfKitBenchmarker.git Cloning into 'PerfKitBenchmarker'... [beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins6090587241159871283.sh + .env/bin/pip install -r PerfKitBenchmarker/requirements.txt Requirement already satisfied (use --upgrade to upgrade): absl-py in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 14)) Requirement already satisfied (use --upgrade to upgrade): jinja2>=2.7 in /usr/local/lib/python2.7/dist-packages (from -r PerfKitBenchmarker/requirements.txt (line 15)) Requirement already satisfied (use --upgrade to upgrade): setuptools in ./.env/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 16)) Requirement already satisfied (use --upgrade to upgrade): colorlog[windows]==2.6.0 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 17)) Installing extra requirements: 'windows' Requirement already satisfied (use --upgrade to upgrade): blinker>=1.3 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 18)) Requirement already satisfied (use --upgrade to upgrade): futures>=3.0.3 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 19)) Requirement already satisfied (use --upgrade to upgrade): PyYAML==3.12 in /usr/local/lib/python2.7/dist-packages (from -r PerfKitBenchmarker/requirements.txt (line 20)) Requirement already satisfied (use --upgrade to upgrade): pint>=0.7 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 21)) Requirement already satisfied (use --upgrade to upgrade): numpy in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 22)) Requirement already satisfied (use --upgrade to upgrade): functools32 in /usr/local/lib/python2.7/dist-packages (from -r PerfKitBenchmarker/requirements.txt (line 23)) Requirement already satisfied (use --upgrade to upgrade): contextlib2>=0.5.1 in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 24)) Requirement already satisfied (use --upgrade to upgrade): pywinrm in /home/jenkins/.local/lib/python2.7/site-packages (from -r PerfKitBenchmarker/requirements.txt (line 25)) Cleaning up... [beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins3553162801093382282.sh + .env/bin/pip install -e 'src/sdks/python/[gcp,test]' Obtaining file://<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/src/sdks/python> Running setup.py (path:<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/src/sdks/python/setup.py)> egg_info for package from file://<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/src/sdks/python> <https://builds.apache.org/job/beam_PerformanceTests_Python/ws/src/sdks/python/setup.py>:66: UserWarning: You are using version 1.5.4 of pip. However, version 7.0.0 is recommended. _PIP_VERSION, REQUIRED_PIP_VERSION no previously-included directories found matching 'doc/.build' Installed <https://builds.apache.org/job/beam_PerformanceTests_Python/ws/src/sdks/python/nose-1.3.7-py2.7.egg> /usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'python_requires' warnings.warn(msg) warning: no files found matching 'README.md' warning: no files found matching 'NOTICE' warning: no files found matching 'LICENSE' Installing extra requirements: 'gcp,test' Requirement already satisfied (use --upgrade to upgrade): avro>=1.8.1,<2.0.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied (use --upgrade to upgrade): crcmod>=1.7,<2.0 in /usr/lib/python2.7/dist-packages (from apache-beam==2.3.0.dev) Requirement already satisfied (use --upgrade to upgrade): dill==0.2.6 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied (use --upgrade to upgrade): grpcio>=1.0,<2 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied (use --upgrade to upgrade): httplib2>=0.8,<0.10 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied (use --upgrade to upgrade): mock>=1.0.1,<3.0.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied (use --upgrade to upgrade): oauth2client>=2.0.1,<5 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied (use --upgrade to upgrade): protobuf>=3.5.0.post1,<4 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied (use --upgrade to upgrade): pyyaml>=3.12,<4.0.0 in /usr/local/lib/python2.7/dist-packages (from apache-beam==2.3.0.dev) Requirement already satisfied (use --upgrade to upgrade): pyvcf>=0.6.8,<0.7.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied (use --upgrade to upgrade): six>=1.9,<1.12 in /usr/local/lib/python2.7/dist-packages (from apache-beam==2.3.0.dev) Requirement already satisfied (use --upgrade to upgrade): typing>=3.6.0,<3.7.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied (use --upgrade to upgrade): futures>=3.1.1,<4.0.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied (use --upgrade to upgrade): hdfs3>=0.3.0,<0.4.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied (use --upgrade to upgrade): pyhamcrest>=1.9,<2.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied (use --upgrade to upgrade): google-apitools>=0.5.18,<=0.5.20 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied (use --upgrade to upgrade): proto-google-cloud-datastore-v1>=0.90.0,<=0.90.4 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied (use --upgrade to upgrade): googledatastore==7.0.1 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied (use --upgrade to upgrade): google-cloud-pubsub==0.26.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Requirement already satisfied (use --upgrade to upgrade): google-cloud-bigquery==0.25.0 in /home/jenkins/.local/lib/python2.7/site-packages (from apache-beam==2.3.0.dev) Installing collected packages: apache-beam Running setup.py develop for apache-beam <https://builds.apache.org/job/beam_PerformanceTests_Python/ws/src/sdks/python/setup.py>:66: UserWarning: You are using version 1.5.4 of pip. However, version 7.0.0 is recommended. _PIP_VERSION, REQUIRED_PIP_VERSION /usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'python_requires' warnings.warn(msg) warning: no files found matching 'README.md' warning: no files found matching 'NOTICE' warning: no files found matching 'LICENSE' Creating <https://builds.apache.org/job/beam_PerformanceTests_Python/ws/.env/lib/python2.7/site-packages/apache-beam.egg-link> (link to .) Adding apache-beam 2.3.0.dev to easy-install.pth file Installed <https://builds.apache.org/job/beam_PerformanceTests_Python/ws/src/sdks/python> Successfully installed apache-beam Cleaning up... [beam_PerformanceTests_Python] $ /bin/bash -xe /tmp/jenkins7091985844151007933.sh + .env/bin/python PerfKitBenchmarker/pkb.py --project=apache-beam-testing --dpb_log_level=INFO --maven_binary=/home/jenkins/tools/maven/latest/bin/mvn --bigquery_table=beam_performance.pkb_results --official=true --beam_sdk=python --benchmarks=beam_integration_benchmark --beam_it_args=--project=apache-beam-testing,--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it,--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it,--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output 2018-01-26 00:00:41,180 8f18d952 MainThread INFO Verbose logging to: /tmp/perfkitbenchmarker/runs/8f18d952/pkb.log 2018-01-26 00:00:41,180 8f18d952 MainThread INFO PerfKitBenchmarker version: v1.12.0-259-g5a6cff9 2018-01-26 00:00:41,181 8f18d952 MainThread INFO Flag values: --beam_sdk=python --beam_it_args=--project=apache-beam-testing,--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it,--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it,--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output --maven_binary=/home/jenkins/tools/maven/latest/bin/mvn --project=apache-beam-testing --bigquery_table=beam_performance.pkb_results --official --dpb_log_level=INFO --benchmarks=beam_integration_benchmark 2018-01-26 00:00:41,972 8f18d952 MainThread WARNING The key "flags" was not in the default config, but was in user overrides. This may indicate a typo. 2018-01-26 00:00:41,972 8f18d952 MainThread INFO Initializing the edw service decoder 2018-01-26 00:00:42,101 8f18d952 MainThread beam_integration_benchmark(1/1) INFO Provisioning resources for benchmark beam_integration_benchmark 2018-01-26 00:00:42,108 8f18d952 MainThread beam_integration_benchmark(1/1) INFO Preparing benchmark beam_integration_benchmark 2018-01-26 00:00:42,109 8f18d952 MainThread beam_integration_benchmark(1/1) INFO Running: git clone https://github.com/apache/beam.git 2018-01-26 00:00:49,025 8f18d952 MainThread beam_integration_benchmark(1/1) INFO Running: /home/jenkins/tools/maven/latest/bin/mvn clean install -DskipTests -Dcheckstyle.skip=true -Pdataflow-runner 2018-01-26 00:10:27,788 8f18d952 MainThread beam_integration_benchmark(1/1) INFO Running benchmark beam_integration_benchmark 2018-01-26 00:10:27,805 8f18d952 MainThread beam_integration_benchmark(1/1) INFO Running: python setup.py nosetests --tests=apache_beam.examples.wordcount_it_test --attr=IT --test-pipeline-options="--project=apache-beam-testing" "--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it" "--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it" "--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output" --runner=TestDataflowRunner --sdk_location=/tmp/perfkitbenchmarker/runs/8f18d952/beam/sdks/python/target/apache-beam-2.3.0.dev0.tar.gz 2018-01-26 00:20:27,811 8f18d952 Thread-4 ERROR IssueCommand timed out after 600 seconds. Killing command "python setup.py nosetests --tests=apache_beam.examples.wordcount_it_test --attr=IT --test-pipeline-options="--project=apache-beam-testing" "--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it" "--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it" "--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output" --runner=TestDataflowRunner --sdk_location=/tmp/perfkitbenchmarker/runs/8f18d952/beam/sdks/python/target/apache-beam-2.3.0.dev0.tar.gz". 2018-01-26 00:20:27,817 8f18d952 MainThread beam_integration_benchmark(1/1) INFO Ran python setup.py nosetests --tests=apache_beam.examples.wordcount_it_test --attr=IT --test-pipeline-options="--project=apache-beam-testing" "--staging_location=gs://temp-storage-for-end-to-end-tests/staging-it" "--temp_location=gs://temp-storage-for-end-to-end-tests/temp-it" "--output=gs://temp-storage-for-end-to-end-tests/py-it-cloud/output" --runner=TestDataflowRunner --sdk_location=/tmp/perfkitbenchmarker/runs/8f18d952/beam/sdks/python/target/apache-beam-2.3.0.dev0.tar.gz. Got return code (-9). STDOUT: running nosetests running egg_info writing requirements to apache_beam.egg-info/requires.txt writing apache_beam.egg-info/PKG-INFO writing top-level names to apache_beam.egg-info/top_level.txt writing dependency_links to apache_beam.egg-info/dependency_links.txt writing entry points to apache_beam.egg-info/entry_points.txt reading manifest file 'apache_beam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'apache_beam.egg-info/SOURCES.txt' STDERR: /usr/local/lib/python2.7/dist-packages/setuptools/dist.py:355: UserWarning: Normalizing '2.3.0.dev' to '2.3.0.dev0' normalized_version, test_wordcount_fnapi_it (apache_beam.examples.wordcount_it_test.WordCountIT) ... /tmp/perfkitbenchmarker/runs/8f18d952/beam/sdks/python/apache_beam/io/gcp/gcsio.py:160: DeprecationWarning: object() takes no parameters super(GcsIO, cls).__new__(cls, storage_client)) /tmp/perfkitbenchmarker/runs/8f18d952/beam/sdks/python/apache_beam/coders/typecoders.py:133: UserWarning: Using fallback coder for typehint: Any. warnings.warn('Using fallback coder for typehint: %r.' % typehint) ok test_wordcount_it (apache_beam.examples.wordcount_it_test.WordCountIT) ... /tmp/perfkitbenchmarker/runs/8f18d952/beam/sdks/python/apache_beam/coders/typecoders.py:133: UserWarning: Using fallback coder for typehint: <type 'NoneType'>. warnings.warn('Using fallback coder for typehint: %r.' % typehint) 2018-01-26 00:20:27,818 8f18d952 MainThread beam_integration_benchmark(1/1) ERROR Error during benchmark beam_integration_benchmark Traceback (most recent call last): File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py";,> line 601, in RunBenchmark DoRunPhase(spec, collector, detailed_timer) File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/pkb.py";,> line 504, in DoRunPhase samples = spec.BenchmarkRun(spec) File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/linux_benchmarks/beam_integration_benchmark.py";,> line 159, in Run job_type=job_type) File "<https://builds.apache.org/job/beam_PerformanceTests_Python/ws/PerfKitBenchmarker/perfkitbenchmarker/providers/gcp/gcp_dpb_dataflow.py";,> line 90, in SubmitJob assert retcode == 0, "Integration Test Failed." AssertionError: Integration Test Failed. 2018-01-26 00:20:27,818 8f18d952 MainThread beam_integration_benchmark(1/1) INFO Cleaning up benchmark beam_integration_benchmark 2018-01-26 00:20:27,820 8f18d952 MainThread beam_integration_benchmark(1/1) ERROR Benchmark 1/1 beam_integration_benchmark (UID: beam_integration_benchmark0) failed. Execution will continue. 2018-01-26 00:20:27,862 8f18d952 MainThread INFO Benchmark run statuses: --------------------------------------------------------------- Name UID Status --------------------------------------------------------------- beam_integration_benchmark beam_integration_benchmark0 FAILED --------------------------------------------------------------- Success rate: 0.00% (0/1) 2018-01-26 00:20:27,862 8f18d952 MainThread INFO Complete logs can be found at: /tmp/perfkitbenchmarker/runs/8f18d952/pkb.log 2018-01-26 00:20:27,862 8f18d952 MainThread INFO Completion statuses can be found at: /tmp/perfkitbenchmarker/runs/8f18d952/completion_statuses.json Build step 'Execute shell' marked build as failure Not sending mail to unregistered user ni...@google.com Not sending mail to unregistered user sdus...@google.com Not sending mail to unregistered user samu...@google.com Not sending mail to unregistered user rob...@frantil.com Not sending mail to unregistered user ekirpic...@gmail.com Not sending mail to unregistered user sweg...@google.com Not sending mail to unregistered user arost...@google.com Not sending mail to unregistered user kirpic...@google.com Not sending mail to unregistered user k...@google.com Not sending mail to unregistered user mark...@google.com Not sending mail to unregistered user ro...@frantil.com Not sending mail to unregistered user git...@alasdairhodge.co.uk Not sending mail to unregistered user ke...@google.com Not sending mail to unregistered user ankurgoe...@gmail.com Not sending mail to unregistered user meliss...@google.com Not sending mail to unregistered user bat...@batbat-linuxworkstation.sea.corp.google.com Not sending mail to unregistered user eh...@google.com Not sending mail to unregistered user holdenka...@google.com Not sending mail to unregistered user dariusz.aniszew...@polidea.com Not sending mail to unregistered user j...@nanthrax.net Not sending mail to unregistered user zhouha...@meituan.com Not sending mail to unregistered user daniel.o.program...@gmail.com Not sending mail to unregistered user sid...@google.com Not sending mail to unregistered user mari...@mariagh.svl.corp.google.com
