Added: websites/staging/taverna/trunk/content/javadoc/taverna-commandline/org/apache/taverna/commandline/CommandLineOptionsImpl.html ============================================================================== --- websites/staging/taverna/trunk/content/javadoc/taverna-commandline/org/apache/taverna/commandline/CommandLineOptionsImpl.html (added) +++ websites/staging/taverna/trunk/content/javadoc/taverna-commandline/org/apache/taverna/commandline/CommandLineOptionsImpl.html Thu Jun 30 15:59:17 2016 @@ -0,0 +1,867 @@ +<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd";> +<!-- NewPage --> +<html lang="en"> +<head> +<!-- Generated by javadoc (1.8.0_91) on Thu Jun 30 16:50:23 BST 2016 --> +<meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> +<title>CommandLineOptionsImpl (Apache Taverna Command-line Tool 3.1.0-incubating API)</title> +<meta name="date" content="2016-06-30"> +<link rel="stylesheet" type="text/css" href="../../../../stylesheet.css" title="Style"> +<script type="text/javascript" src="../../../../script.js"></script> +</head> +<body> +<script type="text/javascript"><!-- + try { + if (location.href.indexOf('is-external=true') == -1) { + parent.document.title="CommandLineOptionsImpl (Apache Taverna Command-line Tool 3.1.0-incubating API)"; 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title="class or interface in java.lang">java.lang.Object</a></li> +<li> +<ul class="inheritance"> +<li>org.apache.taverna.commandline.CommandLineOptionsImpl</li> +</ul> +</li> +</ul> +<div class="description"> +<ul class="blockList"> +<li class="blockList"> +<dl> +<dt>All Implemented Interfaces:</dt> +<dd><a href="../../../../org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></dd> +</dl> +<hr> +<br> +<pre>public class <span class="typeNameLabel">CommandLineOptionsImpl</span> +extends <a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true"; title="class or interface in java.lang">Object</a> +implements <a href="../../../../org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></pre> +<div class="block">Handles the processing of command line arguments for enacting a workflow. + This class encapsulates all command line options, and exposes them through higher-level + accessors. Upon creation it checks the validity of the command line options and raises an + <a href="../../../../org/apache/taverna/commandline/exceptions/InvalidOptionException.html" title="class in org.apache.taverna.commandline.exceptions"><code>InvalidOptionException</code></a> if they are invalid.</div> +<dl> +<dt><span class="simpleTagLabel">Author:</span></dt> +<dd>Stuart Owen, David Withers</dd> +</dl> +</li> +</ul> +</div> +<div class="summary"> +<ul class="blockList"> +<li class="blockList"> +<!-- =========== FIELD SUMMARY =========== --> +<ul class="blockList"> +<li class="blockList"><a name="field.summary"> +<!-- --> +</a> +<h3>Field Summary</h3> +<ul class="blockList"> +<li class="blockList"><a name="fields.inherited.from.class.org.apache.taverna.commandline.options.CommandLineOptions"> +<!-- --> +</a> +<h3>Fields inherited from interface org.apache.taverna.commandline.options.<a href="../../../../org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></h3> +<code><a href="../../../../org/apache/taverna/commandline/options/CommandLineOptions.html#CREDENTIAL_MANAGER_DIR_OPTION">CREDENTIAL_MANAGER_DIR_OPTION</a>, <a href="../../../../org/apache/taverna/commandline/options/CommandLineOptions.html#CREDENTIAL_MANAGER_PASSWORD_OPTION">CREDENTIAL_MANAGER_PASSWORD_OPTION</a></code></li> +</ul> +</li> +</ul> +<!-- ======== CONSTRUCTOR SUMMARY ======== --> +<ul class="blockList"> +<li class="blockList"><a name="constructor.summary"> +<!-- --> +</a> +<h3>Constructor Summary</h3> +<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation"> +<caption><span>Constructors</span><span class="tabEnd"> </span></caption> +<tr> +<th class="colOne" scope="col">Constructor and Description</th> +</tr> +<tr class="altColor"> +<td class="colOne"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#CommandLineOptionsImpl-java.lang.String:A-">CommandLineOptionsImpl</a></span>(<a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true"; title="class or interface in java.lang">String</a>[] args)</code> </td> +</tr> +</table> +</li> +</ul> +<!-- ========== METHOD SUMMARY =========== --> +<ul class="blockList"> +<li class="blockList"><a name="method.summary"> +<!-- --> +</a> +<h3>Method Summary</h3> +<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation"> +<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption> +<tr> +<th class="colFirst" scope="col">Modifier and Type</th> +<th class="colLast" scope="col">Method and Description</th> +</tr> +<tr id="i0" class="altColor"> +<td class="colFirst"><code>boolean</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#askedForHelp--">askedForHelp</a></span>()</code> </td> +</tr> +<tr id="i1" class="rowColor"> +<td class="colFirst"><code>protected void</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#checkForInvalid--">checkForInvalid</a></span>()</code> </td> +</tr> +<tr id="i2" class="altColor"> +<td class="colFirst"><code>void</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#displayHelp--">displayHelp</a></span>()</code> </td> +</tr> +<tr id="i3" class="rowColor"> +<td class="colFirst"><code>void</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#displayHelp-boolean-">displayHelp</a></span>(boolean showFullText)</code> </td> +</tr> +<tr id="i4" class="altColor"> +<td class="colFirst"><code><a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true"; title="class or interface in java.lang">String</a>[]</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#getArgs--">getArgs</a></span>()</code> </td> +</tr> +<tr id="i5" class="rowColor"> +<td class="colFirst"><code><a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true"; title="class or interface in java.lang">String</a></code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#getCredentialManagerDir--">getCredentialManagerDir</a></span>()</code> </td> +</tr> +<tr id="i6" class="altColor"> +<td class="colFirst"><code><a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true"; title="class or interface in java.lang">String</a></code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#getDatabasePort--">getDatabasePort</a></span>()</code> </td> +</tr> +<tr id="i7" class="rowColor"> +<td class="colFirst"><code><a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true"; title="class or interface in java.lang">String</a></code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#getDatabaseProperties--">getDatabaseProperties</a></span>()</code> </td> +</tr> +<tr id="i8" class="altColor"> +<td class="colFirst"><code><a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true"; title="class or interface in java.lang">String</a></code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#getInputBundle--">getInputBundle</a></span>()</code> +<div class="block">Return the path for a data bundle which should be used for + input values.</div> +</td> +</tr> +<tr id="i9" class="rowColor"> +<td class="colFirst"><code><a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true"; title="class or interface in java.lang">String</a>[]</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#getInputFiles--">getInputFiles</a></span>()</code> +<div class="block">Returns an array that alternates between a portname and path to a file + containing the input values.</div> +</td> +</tr> +<tr id="i10" class="altColor"> +<td class="colFirst"><code><a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true"; title="class or interface in java.lang">String</a>[]</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#getInputValues--">getInputValues</a></span>()</code> +<div class="block">Returns an array that alternates between a portname and an + input values.</div> +</td> +</tr> +<tr id="i11" class="rowColor"> +<td class="colFirst"><code><a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true"; title="class or interface in java.lang">String</a></code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#getLogFile--">getLogFile</a></span>()</code> </td> +</tr> +<tr id="i12" class="altColor"> +<td class="colFirst"><code>org.apache.commons.cli.Option[]</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#getOptions--">getOptions</a></span>()</code> </td> +</tr> +<tr id="i13" class="rowColor"> +<td class="colFirst"><code><a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true"; title="class or interface in java.lang">String</a></code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#getOutputDirectory--">getOutputDirectory</a></span>()</code> </td> +</tr> +<tr id="i14" class="altColor"> +<td class="colFirst"><code><a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true"; title="class or interface in java.lang">String</a></code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#getSaveResultsToBundle--">getSaveResultsToBundle</a></span>()</code> </td> +</tr> +<tr id="i15" class="rowColor"> +<td class="colFirst"><code>boolean</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#getStartDatabase--">getStartDatabase</a></span>()</code> </td> +</tr> +<tr id="i16" class="altColor"> +<td class="colFirst"><code>boolean</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#getStartDatabaseOnly--">getStartDatabaseOnly</a></span>()</code> </td> +</tr> +<tr id="i17" class="rowColor"> +<td class="colFirst"><code><a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true"; title="class or interface in java.lang">String</a></code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#getWorkflow--">getWorkflow</a></span>()</code> </td> +</tr> +<tr id="i18" class="altColor"> +<td class="colFirst"><code>boolean</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#hasDelimiterFor-java.lang.String-">hasDelimiterFor</a></span>(<a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true"; title="class or interface in java.lang">String</a> inputName)</code> </td> +</tr> +<tr id="i19" class="rowColor"> +<td class="colFirst"><code>boolean</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#hasInputBundle--">hasInputBundle</a></span>()</code> </td> +</tr> +<tr id="i20" class="altColor"> +<td class="colFirst"><code>boolean</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#hasInputFiles--">hasInputFiles</a></span>()</code> </td> +</tr> +<tr id="i21" class="rowColor"> +<td class="colFirst"><code>boolean</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#hasInputValues--">hasInputValues</a></span>()</code> </td> +</tr> +<tr id="i22" class="altColor"> +<td class="colFirst"><code>boolean</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#hasLogFile--">hasLogFile</a></span>()</code> </td> +</tr> +<tr id="i23" class="rowColor"> +<td class="colFirst"><code>boolean</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#hasOption-java.lang.String-">hasOption</a></span>(<a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true"; title="class or interface in java.lang">String</a> option)</code> </td> +</tr> +<tr id="i24" class="altColor"> +<td class="colFirst"><code>boolean</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#hasSaveResultsToBundle--">hasSaveResultsToBundle</a></span>()</code> </td> +</tr> +<tr id="i25" class="rowColor"> +<td class="colFirst"><code><a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true"; title="class or interface in java.lang">String</a></code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#inputDelimiter-java.lang.String-">inputDelimiter</a></span>(<a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true"; title="class or interface in java.lang">String</a> inputName)</code> </td> +</tr> +<tr id="i26" class="altColor"> +<td class="colFirst"><code>boolean</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#isClientServer--">isClientServer</a></span>()</code> </td> +</tr> +<tr id="i27" class="rowColor"> +<td class="colFirst"><code>boolean</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#isEmbedded--">isEmbedded</a></span>()</code> </td> +</tr> +<tr id="i28" class="altColor"> +<td class="colFirst"><code>boolean</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#isInMemory--">isInMemory</a></span>()</code> </td> +</tr> +<tr id="i29" class="rowColor"> +<td class="colFirst"><code>boolean</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#isProvenanceEnabled--">isProvenanceEnabled</a></span>()</code> </td> +</tr> +<tr id="i30" class="altColor"> +<td class="colFirst"><code>boolean</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html#saveResultsToDirectory--">saveResultsToDirectory</a></span>()</code> +<div class="block">Save the results to a directory if -outputdir has been explicitly defined, + or if -bundlec has not been defined.</div> +</td> +</tr> +</table> +<ul class="blockList"> +<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object"> +<!-- --> +</a> +<h3>Methods inherited from class java.lang.<a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true"; 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title="class or interface in java.lang">String</a> getSaveResultsToBundle()</pre> +<dl> +<dt><span class="overrideSpecifyLabel">Specified by:</span></dt> +<dd><code><a href="../../../../org/apache/taverna/commandline/options/CommandLineOptions.html#getSaveResultsToBundle--">getSaveResultsToBundle</a></code> in interface <code><a href="../../../../org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></code></dd> +</dl> +</li> +</ul> +<a name="hasSaveResultsToBundle--"> +<!-- --> +</a> +<ul class="blockList"> +<li class="blockList"> +<h4>hasSaveResultsToBundle</h4> +<pre>public boolean hasSaveResultsToBundle()</pre> +<dl> +<dt><span class="overrideSpecifyLabel">Specified by:</span></dt> +<dd><code><a href="../../../../org/apache/taverna/commandline/options/CommandLineOptions.html#hasSaveResultsToBundle--">hasSaveResultsToBundle</a></code> in interface <code><a href="../../../../org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></code></dd> +</dl> +</li> +</ul> +<a name="getInputBundle--"> +<!-- --> +</a> +<ul class="blockList"> +<li class="blockList"> +<h4>getInputBundle</h4> +<pre>public <a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true"; title="class or interface in java.lang">String</a> getInputBundle()</pre> +<div class="block"><span class="descfrmTypeLabel">Description copied from interface: <code><a href="../../../../org/apache/taverna/commandline/options/CommandLineOptions.html#getInputBundle--">CommandLineOptions</a></code></span></div> +<div class="block">Return the path for a data bundle which should be used for + input values. This option can't be used together with + <a href="../../../../org/apache/taverna/commandline/options/CommandLineOptions.html#getInputFiles--"><code>CommandLineOptions.getInputFiles()</code></a> or <a href="../../../../org/apache/taverna/commandline/options/CommandLineOptions.html#getInputValues--"><code>CommandLineOptions.getInputValues()</code></a></div> +<dl> +<dt><span class="overrideSpecifyLabel">Specified by:</span></dt> +<dd><code><a href="../../../../org/apache/taverna/commandline/options/CommandLineOptions.html#getInputBundle--">getInputBundle</a></code> in interface <code><a href="../../../../org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></code></dd> +</dl> +</li> +</ul> +<a name="hasInputBundle--"> +<!-- --> +</a> +<ul class="blockListLast"> +<li class="blockList"> +<h4>hasInputBundle</h4> +<pre>public boolean hasInputBundle()</pre> +<dl> +<dt><span class="overrideSpecifyLabel">Specified by:</span></dt> +<dd><code><a href="../../../../org/apache/taverna/commandline/options/CommandLineOptions.html#hasInputBundle--">hasInputBundle</a></code> in interface <code><a href="../../../../org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a></code></dd> +</dl> +</li> +</ul> +</li> +</ul> +</li> +</ul> +</div> +</div> +<!-- ========= END OF CLASS DATA ========= --> +<!-- ======= START OF BOTTOM NAVBAR ====== --> +<div class="bottomNav"><a name="navbar.bottom"> +<!-- --> +</a> +<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div> +<a name="navbar.bottom.firstrow"> +<!-- --> +</a> +<ul class="navList" title="Navigation"> +<li><a href="../../../../overview-summary.html">Overview</a></li> +<li><a href="package-summary.html">Package</a></li> +<li class="navBarCell1Rev">Class</li> +<li><a href="class-use/CommandLineOptionsImpl.html">Use</a></li> +<li><a href="package-tree.html">Tree</a></li> +<li><a href="../../../../deprecated-list.html">Deprecated</a></li> +<li><a href="../../../../index-all.html">Index</a></li> +<li><a href="../../../../help-doc.html">Help</a></li> +</ul> +</div> +<div class="subNav"> +<ul class="navList"> +<li><a href="../../../../org/apache/taverna/commandline/CommandLineMasterPasswordProvider.html" title="class in org.apache.taverna.commandline"><span class="typeNameLink">Prev Class</span></a></li> +<li><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html" title="class in org.apache.taverna.commandline"><span class="typeNameLink">Next Class</span></a></li> +</ul> +<ul class="navList"> +<li><a href="../../../../index.html?org/apache/taverna/commandline/CommandLineOptionsImpl.html" target="_top">Frames</a></li> +<li><a href="CommandLineOptionsImpl.html" target="_top">No Frames</a></li> +</ul> +<ul class="navList" id="allclasses_navbar_bottom"> +<li><a href="../../../../allclasses-noframe.html">All Classes</a></li> +</ul> +<div> +<script type="text/javascript"><!-- + allClassesLink = document.getElementById("allclasses_navbar_bottom"); + if(window==top) { + allClassesLink.style.display = "block"; + } + else { + allClassesLink.style.display = "none"; + } + //--> +</script> +</div> +<div> +<ul class="subNavList"> +<li>Summary: </li> +<li>Nested | </li> +<li>Field | </li> +<li><a href="#constructor.summary">Constr</a> | </li> +<li><a href="#method.summary">Method</a></li> +</ul> +<ul class="subNavList"> +<li>Detail: </li> +<li>Field | </li> +<li><a href="#constructor.detail">Constr</a> | </li> +<li><a href="#method.detail">Method</a></li> +</ul> +</div> +<a name="skip.navbar.bottom"> +<!-- --> +</a></div> +<!-- ======== END OF BOTTOM NAVBAR ======= --> +<p class="legalCopy"><small>Copyright © 2015–2016 <a href="http://www.apache.org/";>The Apache Software Foundation</a>. 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+ if(window==top) { + allClassesLink.style.display = "block"; + } + else { + allClassesLink.style.display = "none"; + } + //--> +</script> +</div> +<div> +<ul class="subNavList"> +<li>Summary: </li> +<li>Nested | </li> +<li>Field | </li> +<li><a href="#constructor.summary">Constr</a> | </li> +<li><a href="#method.summary">Method</a></li> +</ul> +<ul class="subNavList"> +<li>Detail: </li> +<li>Field | </li> +<li><a href="#constructor.detail">Constr</a> | </li> +<li><a href="#method.detail">Method</a></li> +</ul> +</div> +<a name="skip.navbar.top"> +<!-- --> +</a></div> +<!-- ========= END OF TOP NAVBAR ========= --> +<!-- ======== START OF CLASS DATA ======== --> +<div class="header"> +<div class="subTitle">org.apache.taverna.commandline</div> +<h2 title="Class CommandLineTool" class="title">Class CommandLineTool</h2> +</div> +<div class="contentContainer"> +<ul class="inheritance"> +<li><a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true"; title="class or interface in java.lang">java.lang.Object</a></li> +<li> +<ul class="inheritance"> +<li>org.apache.taverna.commandline.CommandLineTool</li> +</ul> +</li> +</ul> +<div class="description"> +<ul class="blockList"> +<li class="blockList"> +<hr> +<br> +<pre>public class <span class="typeNameLabel">CommandLineTool</span> +extends <a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true"; title="class or interface in java.lang">Object</a></pre> +<div class="block">A utility class that wraps the process of executing a workflow, allowing workflows to be easily + executed independently of the GUI.</div> +<dl> +<dt><span class="simpleTagLabel">Author:</span></dt> +<dd>Stuart Owen, Alex Nenadic</dd> +</dl> +</li> +</ul> +</div> +<div class="summary"> +<ul class="blockList"> +<li class="blockList"> +<!-- ======== CONSTRUCTOR SUMMARY ======== --> +<ul class="blockList"> +<li class="blockList"><a name="constructor.summary"> +<!-- --> +</a> +<h3>Constructor Summary</h3> +<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Constructor Summary table, listing constructors, and an explanation"> +<caption><span>Constructors</span><span class="tabEnd"> </span></caption> +<tr> +<th class="colOne" scope="col">Constructor and Description</th> +</tr> +<tr class="altColor"> +<td class="colOne"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#CommandLineTool--">CommandLineTool</a></span>()</code> </td> +</tr> +</table> +</li> +</ul> +<!-- ========== METHOD SUMMARY =========== --> +<ul class="blockList"> +<li class="blockList"><a name="method.summary"> +<!-- --> +</a> +<h3>Method Summary</h3> +<table class="memberSummary" border="0" cellpadding="3" cellspacing="0" summary="Method Summary table, listing methods, and an explanation"> +<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption> +<tr> +<th class="colFirst" scope="col">Modifier and Type</th> +<th class="colLast" scope="col">Method and Description</th> +</tr> +<tr id="i0" class="altColor"> +<td class="colFirst"><code>protected void</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#error-java.lang.String-">error</a></span>(<a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true"; title="class or interface in java.lang">String</a> msg)</code> </td> +</tr> +<tr id="i1" class="rowColor"> +<td class="colFirst"><code>protected void</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#error-java.lang.String-java.lang.Throwable-">error</a></span>(<a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true"; title="class or interface in java.lang">String</a> message, + <a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Throwable.html?is-external=true"; title="class or interface in java.lang">Throwable</a> e)</code> </td> +</tr> +<tr id="i2" class="altColor"> +<td class="colFirst"><code>protected void</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#error-java.lang.Throwable-">error</a></span>(<a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Throwable.html?is-external=true"; title="class or interface in java.lang">Throwable</a> e)</code> </td> +</tr> +<tr id="i3" class="rowColor"> +<td class="colFirst"><code>void</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#run--">run</a></span>()</code> </td> +</tr> +<tr id="i4" class="altColor"> +<td class="colFirst"><code>void</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#setCommandLineOptions-org.apache.taverna.commandline.options.CommandLineOptions-">setCommandLineOptions</a></span>(<a href="../../../../org/apache/taverna/commandline/options/CommandLineOptions.html" title="interface in org.apache.taverna.commandline.options">CommandLineOptions</a> commandLineOptions)</code> </td> +</tr> +<tr id="i5" class="rowColor"> +<td class="colFirst"><code>void</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#setCredentialManager-org.apache.taverna.security.credentialmanager.CredentialManager-">setCredentialManager</a></span>(<a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/security/credentialmanager/CredentialManager.html?is-external=true"; title="class or interface in org.apache.taverna.security.credentialmanager">CredentialManager</a> credentialManager)</code> </td> +</tr> +<tr id="i6" class="altColor"> +<td class="colFirst"><code>void</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#setDatabaseConfiguration-org.apache.taverna.configuration.database.DatabaseConfiguration-">setDatabaseConfiguration</a></span>(<a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/configuration/database/DatabaseConfiguration.html?is-external=true"; title="class or interface in org.apache.taverna.configuration.database">DatabaseConfiguration</a> databaseConfiguration)</code> +<div class="block">Sets the databaseConfiguration.</div> +</td> +</tr> +<tr id="i7" class="rowColor"> +<td class="colFirst"><code>void</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#setDatabaseManager-org.apache.taverna.configuration.database.DatabaseManager-">setDatabaseManager</a></span>(<a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/configuration/database/DatabaseManager.html?is-external=true"; title="class or interface in org.apache.taverna.configuration.database">DatabaseManager</a> databaseManager)</code> +<div class="block">Sets the databaseManager.</div> +</td> +</tr> +<tr id="i8" class="altColor"> +<td class="colFirst"><code>void</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#setRunService-org.apache.taverna.platform.run.api.RunService-">setRunService</a></span>(<a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/platform/run/api/RunService.html?is-external=true"; title="class or interface in org.apache.taverna.platform.run.api">RunService</a> runService)</code> </td> +</tr> +<tr id="i9" class="rowColor"> +<td class="colFirst"><code>int</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#setupAndExecute--">setupAndExecute</a></span>()</code> </td> +</tr> +<tr id="i10" class="altColor"> +<td class="colFirst"><code>void</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#setWorkflowBundleIO-org.apache.taverna.scufl2.api.io.WorkflowBundleIO-">setWorkflowBundleIO</a></span>(<a href="https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/api/io/WorkflowBundleIO.html?is-external=true"; title="class or interface in org.apache.taverna.scufl2.api.io">WorkflowBundleIO</a> workflowBundleIO)</code> </td> +</tr> +<tr id="i11" class="rowColor"> +<td class="colFirst"><code>protected void</code></td> +<td class="colLast"><code><span class="memberNameLink"><a href="../../../../org/apache/taverna/commandline/CommandLineTool.html#validateWorkflowBundle-org.apache.taverna.scufl2.api.container.WorkflowBundle-">validateWorkflowBundle</a></span>(<a href="https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/api/container/WorkflowBundle.html?is-external=true"; title="class or interface in org.apache.taverna.scufl2.api.container">WorkflowBundle</a> workflowBundle)</code> </td> +</tr> +</table> +<ul class="blockList"> +<li class="blockList"><a name="methods.inherited.from.class.java.lang.Object"> +<!-- --> +</a> +<h3>Methods inherited from class java.lang.<a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true"; title="class or interface in java.lang">Object</a></h3> +<code><a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true#clone--"; title="class or interface in java.lang">clone</a>, <a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true#equals-java.lang.Object-"; title="class or interface in java.lang">equals</a>, <a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true#finalize--"; title="class or interface in java.lang">finalize</a>, <a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true#getClass--"; title="class or interface in java.lang">getClass</a>, <a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true#hashCode--"; title="class or interface in java.lang">hashCode</a>, <a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true#notify--"; title="class or interface in java.lang">notify</a>, <a href="http://docs.oracle.com/javase/7/docs/api/java/lang /Object.html?is-external=true#notifyAll--" title="class or interface in java.lang">notifyAll</a>, <a href="http://docs.oracle.com/javase/7/docs/api/java/lang/Object.html?is-external=true#toString--"; 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title="class or interface in org.apache.taverna.security.credentialmanager">CMException</a></code></dd> +<dd><code><a href="../../../../org/apache/taverna/commandline/exceptions/OpenDataflowException.html" title="class in org.apache.taverna.commandline.exceptions">OpenDataflowException</a></code></dd> +<dd><code><a href="https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/api/io/ReaderException.html?is-external=true"; title="class or interface in org.apache.taverna.scufl2.api.io">ReaderException</a></code></dd> +<dd><code><a href="http://docs.oracle.com/javase/7/docs/api/java/io/IOException.html?is-external=true"; title="class or interface in java.io">IOException</a></code></dd> +<dd><code><a href="https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/validation/ValidationException.html?is-external=true"; title="class or interface in org.apache.taverna.scufl2.validation">ValidationException</a></code></dd> +<dd><code><a href="../../../../org/apache/taverna/commandline/exceptions/ReadInputException.html" title="class in org.apache.taverna.commandline.exceptions">ReadInputException</a></code></dd> +<dd><code><a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/platform/execution/api/InvalidWorkflowException.html?is-external=true"; 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title="class or interface in org.apache.taverna.scufl2.validation">ValidationException</a></pre> +<dl> +<dt><span class="throwsLabel">Throws:</span></dt> +<dd><code><a href="https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/validation/ValidationException.html?is-external=true"; title="class or interface in org.apache.taverna.scufl2.validation">ValidationException</a></code></dd> +</dl> +</li> +</ul> +<a name="error-java.lang.String-"> +<!-- --> +</a> +<ul class="blockList"> +<li class="blockList"> +<h4>error</h4> +<pre>protected void error(<a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true"; title="class or interface in java.lang">String</a> msg)</pre> +</li> +</ul> +<a name="error-java.lang.String-java.lang.Throwable-"> +<!-- --> +</a> +<ul class="blockList"> +<li class="blockList"> +<h4>error</h4> +<pre>protected void error(<a href="http://docs.oracle.com/javase/7/docs/api/java/lang/String.html?is-external=true"; 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title="class or interface in org.apache.taverna.platform.run.api">RunService</a> runService)</pre> +</li> +</ul> +<a name="setCredentialManager-org.apache.taverna.security.credentialmanager.CredentialManager-"> +<!-- --> +</a> +<ul class="blockList"> +<li class="blockList"> +<h4>setCredentialManager</h4> +<pre>public void setCredentialManager(<a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/security/credentialmanager/CredentialManager.html?is-external=true"; title="class or interface in org.apache.taverna.security.credentialmanager">CredentialManager</a> credentialManager)</pre> +</li> +</ul> +<a name="setWorkflowBundleIO-org.apache.taverna.scufl2.api.io.WorkflowBundleIO-"> +<!-- --> +</a> +<ul class="blockList"> +<li class="blockList"> +<h4>setWorkflowBundleIO</h4> +<pre>public void setWorkflowBundleIO(<a href="https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/api/io/WorkflowBundleIO.html?is-external=true"; title="class or interface in org.apache.taverna.scufl2.api.io">WorkflowBundleIO</a> workflowBundleIO)</pre> +</li> +</ul> +<a name="setDatabaseConfiguration-org.apache.taverna.configuration.database.DatabaseConfiguration-"> +<!-- --> +</a> +<ul class="blockList"> +<li class="blockList"> +<h4>setDatabaseConfiguration</h4> +<pre>public void setDatabaseConfiguration(<a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/configuration/database/DatabaseConfiguration.html?is-external=true"; title="class or interface in org.apache.taverna.configuration.database">DatabaseConfiguration</a> databaseConfiguration)</pre> +<div class="block">Sets the databaseConfiguration.</div> +<dl> +<dt><span class="paramLabel">Parameters:</span></dt> +<dd><code>databaseConfiguration</code> - the new value of databaseConfiguration</dd> +</dl> +</li> +</ul> +<a name="setDatabaseManager-org.apache.taverna.configuration.database.DatabaseManager-"> +<!-- --> +</a> +<ul class="blockListLast"> +<li class="blockList"> +<h4>setDatabaseManager</h4> +<pre>public void setDatabaseManager(<a href="https://taverna.incubator.apache.org/javadoc/taverna-engine/org/apache/taverna/configuration/database/DatabaseManager.html?is-external=true"; title="class or interface in org.apache.taverna.configuration.database">DatabaseManager</a> databaseManager)</pre> +<div class="block">Sets the databaseManager.</div> +<dl> +<dt><span class="paramLabel">Parameters:</span></dt> +<dd><code>databaseManager</code> - the new value of databaseManager</dd> +</dl> +</li> +</ul> +</li> +</ul> +</li> +</ul> +</div> +</div> +<!-- ========= END OF CLASS DATA ========= --> +<!-- ======= START OF BOTTOM NAVBAR ====== --> +<div class="bottomNav"><a name="navbar.bottom"> +<!-- --> +</a> +<div class="skipNav"><a href="#skip.navbar.bottom" title="Skip navigation links">Skip navigation links</a></div> +<a name="navbar.bottom.firstrow"> +<!-- --> +</a> +<ul class="navList" title="Navigation"> +<li><a href="../../../../overview-summary.html">Overview</a></li> +<li><a href="package-summary.html">Package</a></li> +<li class="navBarCell1Rev">Class</li> +<li><a href="class-use/CommandLineTool.html">Use</a></li> +<li><a href="package-tree.html">Tree</a></li> +<li><a href="../../../../deprecated-list.html">Deprecated</a></li> +<li><a href="../../../../index-all.html">Index</a></li> +<li><a href="../../../../help-doc.html">Help</a></li> +</ul> +</div> +<div class="subNav"> +<ul class="navList"> +<li><a href="../../../../org/apache/taverna/commandline/CommandLineOptionsImpl.html" title="class in org.apache.taverna.commandline"><span class="typeNameLink">Prev Class</span></a></li> +<li><a href="../../../../org/apache/taverna/commandline/CommandLineUtils.html" title="class in org.apache.taverna.commandline"><span class="typeNameLink">Next Class</span></a></li> +</ul> +<ul class="navList"> +<li><a href="../../../../index.html?org/apache/taverna/commandline/CommandLineTool.html" target="_top">Frames</a></li> +<li><a href="CommandLineTool.html" target="_top">No Frames</a></li> +</ul> +<ul class="navList" id="allclasses_navbar_bottom"> +<li><a href="../../../../allclasses-noframe.html">All Classes</a></li> +</ul> +<div> +<script type="text/javascript"><!-- + allClassesLink = document.getElementById("allclasses_navbar_bottom"); 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