Thanks Gert. Actually the setReaderThread() method (and some others) were explicitly removed as I made changes to the class hierarchy of FTPClient. Previously it inherited from TelnetClient, and as such, had to inherit some problematic threading code that came with that. However in 2.0, it now inherits directly from SocketClient, so calls like setReaderThread() are now redundant. This seems to have fixed a variety of threading issues, however I believe there are still some (possibly unrelated) issues that may be out there. One of them seems explicitly connected to Linux (and maybe Red hat Enterprise in particular). I have heard off-list from someone who has had hanging issues with IIS 6.0/Linux kernel 2.6.x, but no issues with kernel 2.4.x.
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