Hi All, Sorry I am a bit naive about how to set this up on the Mac. I use Bill Scott's standalone downloads to install and update Coot into my /Library/Coot directory. Where should I create the directory data? Should it be in /Library/Coot or one of the subdirectories there? What is the syntax for the setenv command for the Mac OSX running bash? Can I place this command into my .bashrc file or my .bash_profile file?
Thanks! Joe ___________________________________________________________ Joseph P. Noel, Ph.D. Investigator, Howard Hughes Medical Institute Professor, The Jack H. Skirball Center for Chemical Biology and Proteomics The Salk Institute for Biological Studies 10010 North Torrey Pines Road La Jolla, CA 92037 USA Phone: (858) 453-4100 extension 1442 Cell: (858) 349-4700 Fax: (858) 597-0855 E-mail: [email protected] Web Site (Salk): http://www.salk.edu/faculty/noel.html Web Site (HHMI): http://hhmi.org/research/investigators/noel.html ___________________________________________________________ On Mar 24, 2011, at 9:42 AM, Paul Emsley wrote: > I'd just like to clarify a bit (in the light of the conversation with Garib). > > I tested the new version and it seems to work well - for proteins at least. > > Download the Refmac dictionary: > > http://www.ysbl.york.ac.uk/refmac/data/refmac_experimental/refmac_dictionary_v5.26.tar.gz > create a directory data > untar the refmac dictionary tar in the data directory > setenv COOT_REFMAC_MON_LIB_DIR . > start coot > > - and you should see it start up and read the standard residue definitions, > data/monomers/x/XXX.cif etc. > > i.e. PDB and Phenix files (pdb v3.x) work in Coot (and presumably Refmac) > [and yes, with hydrogens too]. > > When I have tested NAs I will post about this the the CCP4BB too. > > Bernhard and I will be teaching in China next week so it may well be > difficult to correspond as normal. > > Paul. >
