On 30/03/11 10:44, Andreas Förster wrote:
in revision 3315, I also had to use the variable name COOT_REFMAC_LIB_DIR to read it the new dictionary, and I get the same "problem reading link angle mmCIFLoop" warning.
OK, I have tracked this down - it was due to the use of _chem_link_angle.linkId instead of _chem_link_angle.link_id in lists/mon_lib_list.cif. It affected the 'ACYSNN' and 'ALASNN' link descriptions - I don't know what they are, so I suspect that Coot didn't either.
So practically speaking, the warnings are harmless and I imagine that Garib will make them go away in the next release.
If you are using nucleotides with the v3 dictionary you will probably want to use this setting too:
(set-convert-to-v2-atom-names 0) or pythonicly: set_convert_to_v2_atom_names(0) Paul.
