For the record, I hope/think that this is the same problem that is
currently affecting the RedHat 5 builds too about which one or two
others have contacted me. (We don't catch it because the automatic
testing doesn't start the gui.)
Paul.
On 26/01/12 13:36, Bernhard Lohkamp wrote:
Hi Kay,
OK, my bad I guess. Am about to fix this. I will commit a quick fix
until I permanently fix this issue. Seems to behave differently on
different systems as I havent seen this error.
If you want a quick fix:
comment out (using #) or delete the following line in
coot_load_modules.py (in COOT/share/coot/python):
>
"get_recent_pdbe.py",
>
Hope this resolves the problem,
B
Dear Paul,
we have happily been running the coot-Linux-x86_64-centos-5-gtk2-python
build on our Scientific Linux 6.1 (RHEL-6 clone) machines. In
particular, version 3607 has been working very well for quite some time
now.
Today I tried to upgrade to version 3965, using
coot-0.7-pre-1-revision-3965-binary-Linux-x86_64-centos-5-python-gtk2.tar.gz
However this crashes after showing the coot logo:
...
Good Afternoon Kay, Welcome to Coot. 0.7-pre-1 (revision 3965) [with
guile 1.8.7 embedded] [with python 2.7.0 embedded]
(set-display-intro-string "Good Afternoon Dikay, Welcome to Coot.
0.7-pre-1 (revision 3965) [with guile 1.8.7 embedded] [with python 2.7.0
embedded]")
Loading: mutate.py
Loading: refmac.py
Loading: libcheck.py
Loading: gap.py
Loading: fitting.py
Loading: raster3d.py
Loading: povray.py
Loading: remote_control.py
Loading: generic_objects.py
Loading: ncs.py
Loading: parse_pisa_xml.py
Loading: cns2coot.py
Loading: tips.py
Loading: americanisms.py
Loading: group_settings.py
Loading: brute_lsqman.py
Loading: coot_gui.py
Coot Python Scripting GUI code found and loaded.
Loading: tips_gui.py
Loading: check_for_updates.py
Loading: get_recent_pdbe.py
Loading: shelx_extensions.py
Loading: prodrg_import.py
new prodrg_import.py
Loading: clear_backup.py
Loading: coot_toolbuttons.py
INFO:: loading preferences file
/home/dikay/.coot-preferences/coot_preferences.py
Running python script /home/dikay/.coot-preferences/coot_preferences.py
(set-filter-fileselection-filenames 1)
(unset-sticky-sort-by-date)
(set-colour-map-rotation-on-read-pdb 21.00)
(set-colour-map-rotation-on-read-pdb-c-only-flag 1)
(set-density-size 20.00)
(set-swap-difference-map-colours 0)
(set-colour-map-rotation-for-maps 14.00)
(set-active-map-drag-flag 1)
(set-idle-function-rotate-angle 1.00)
(filter-fileselection-filenames-state)
(get-active-map-drag-flag)
(use-graphics-interface-state)
GThread-ERROR **: GThread system may only be initialized once.
aborting...
/usr/local/src/new/coot-Linux-x86_64-centos-5-gtk2-python/bin/coot: line
247: 4557 Aborted (core dumped) $coot_real $@
The same problem was reported on May 23, 2011 by Richard Birkinshaw,
without resolution.
So is anybody successfully using the latest CentOS-5 x86_64 builds on
CentOS-6 or SL-6 or RHEL6 ? And if so, what goes wrong in my case, and
similarly for others, as reported?
thanks,
Kay
