On 02/10/2012 09:50 PM, Bernhard Rupp (Hofkristallrat a.D.) wrote:
Hi Fellows,following Kay's idea, I unpacked coot-0.6.2-binary-Linux-x86_64-centos-5-python-gtk2.tar.gz: ./bin/coot-real: error while loading shared libraries: libssl.so.6: cannot open shared object file: No such file or directory ok, I yum it to be safe, find it in
yum gave you a (useless) 32bit library.So my advice (at bottom of email) was only half of the solution, and it didn't even apply to you. Sorry for that! The solution for the above problem would have been to symlink the existing /usr/lib64/libssl.so into coot's lib directory.
/usr/lib/libssl.so.6 and export LD_LIBRARY_PATH=/usr/lib
modifying LD_LIBRARY_PATH leads to all kinds of problems since essentially from now on the loader does not find the 64bit libs any more!
Now the vengeance of the ELF (soon coming to a workstation near you) is unleashed upon me: ./bin/coot-real: error while loading shared libraries: libssl.so.6: wrong ELF class: ELFCLASS32 coot-exe: "./bin/coot-real" Maybe I need the CLASS of 64 for my elf reunion?
the elves would tell you to export LD_LIBRARY_PATH=""
I guess I better let the pro's deal with this and wait for a new binary.
see http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Coot#Example:_installing_a_64bit_nightly_CentOS5_binary_build_on_64bit_SL6.1
HTH, Kay
Anyhow, thanks for all the tips. Cheers, BR PS: current rhel build version coot-0.6.2-binary-Linux-x86_64-rhel-4-gtk2.tar.gz ./bin/coot-real: error while loading shared libraries: libldap-2.2.so.7: cannot open shared object file: No such file or directory Yum: No package libldap-2.2.so.7 available. PPS: latest (32 bit?) prebuild coot-0.7-pre-1-revision-3999-binary-Linux-i386-rhel-5-python-gtk2.tar.gz After a lot of yumming Coot actually starts, but I get a lengthy error log and a version of the previously reported problem with the icon SVGs (sidebar mostly empty) PPPS: coot-0.7-pre-1-revision-3999-binary-Linux-x86_64-rhel-4-python-gtk2.tar.gz same as above with coot-0.6.2-binary-Linux-x86_64-rhel-4-gtk2.tar.gz PPPPS: definition of insanity: doing the same thing over and over and expecting a different outcome. -----Original Message----- From: Mailing list for users of COOT Crystallographic Software [mailto:COOT@JISCMAIL.AC.UK] On Behalf Of Kay Diederichs Sent: Thursday, February 09, 2012 11:39 PM To: COOT@JISCMAIL.AC.UK Subject: Re: Coot Book of the Genesis Bernhard, the CentOS5 binaries used to work well on RHEL6 /CentOS6/ SL6 ; there was a glitch a few weeks ago which was fixed after I reported it ( https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=coot;31d9d7f5.1201 ). I install the latest nightly build every couple of months / weeks, and this works very well. So for those who are not interested in learning to build coot (including me) the binaries are the way to go. If the CentOS5 binary needs libraries on RHEL6 /CentOS6/ SL6 , this can be fixed in the way that applies to all s/w packages: from the error message, find the name of the library; yum install<thatlibrary>; repeat until success. Works very well, even with a mix of 32bit and 64bit libraries. good luck, Kay
-- Kay Diederichs http://strucbio.biologie.uni-konstanz.de email: kay.diederi...@uni-konstanz.de Tel +49 7531 88 4049 Fax 3183 Fachbereich Biologie, Universität Konstanz, Box M647, D-78457 Konstanz This e-mail is digitally signed. If your e-mail client does not have the necessary capabilities, just ignore the attached signature "smime.p7s".
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