Dear Özkan and all,
this question was asked by Dave a month and a half ago
(https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind1303&L=coot&P=R286),
but there was no reply.
Snow Leopard is deprecated, even though 25% of OSX users, presumably
unwilling to downgrade their laptop to a smartphone clone, still use it.
I understand that Bill doesn't have an SL machine anymore.
But please, please, is there a way to keep coot going on SL?
Andreas
On 24/04/2013 8:57, Engin Özkan wrote:
Hi everybody,
After a long break, I tried to run coot on my 10.6.8 Mac, but could not
even start coot. I am running the latest fink package (0.7.1-pre-4562),
but I also tried the latest stand-alone binary (4613) from Bill Scott. I
would appreciate anyone with hints to solve this problem.
Coot dies around here:
There are 2 data in /Library/Coot/share/coot/lib/data/monomers/h/HOH.cif
There are 1 data in /Library/Coot/share/coot/lib/data/monomers/ener_lib.cif
Reading coordinate file: /Library/Coot/share/coot/standard-residues.pdb
PDB file /Library/Coot/share/coot/standard-residues.pdb has been read.
Spacegroup: P 1
Cell: 40.631 109.18 93.243 90 90 90
initalize graphics molecules...done.
*(filter-fileselection-filenames-state)**
**(get-active-map-drag-flag)*
/usr/local/bin/coot: line 7: 924 Segmentation fault
/Library/Coot/bin/coot-real "$@"
Below are the gdb backtraces. (gdb also warned about a million missing
object files, but I think that has more to do with how the executables
are produced, and gdb looks for things; I may be very wrong.)
For the stand-alone coot,
... (a very long list of library object files missing)
warning: Could not find object file
"/Library/Coot/src/fink.build/libcroco3-0.6.6-1/libcroco-0.6.6/src/.libs/libcroco_0_6_la-cr-prop-list.o"
- no debug information available for "cr-prop-list.c".
warning: Could not find object file
"/Library/Coot/src/fink.build/libcroco3-0.6.6-1/libcroco-0.6.6/src/.libs/libcroco_0_6_la-cr-parsing-location.o"
- no debug information available for "cr-parsing-location.c".
warning: Could not find object file
"/Library/Coot/src/fink.build/libcroco3-0.6.6-1/libcroco-0.6.6/src/.libs/libcroco_0_6_la-cr-string.o"
- no debug information available for "cr-string.c".
....... done
#0 0x0000000000000000 in ?? ()
(gdb) where
#0 0x0000000000000000 in ?? ()
#1 0x00000001034160e7 in PyEval_GetGlobals ()
#2 0x0000000103436372 in PyImport_Import ()
#3 0x00000001034365a8 in PyImport_ImportModule ()
#4 0x00000001033760d8 in PyCapsule_Import ()
#5 0x000000010040c96e in _wrap_segment_map ()
#6 0x000000010046d69f in _wrap_make_variance_map ()
#7 0x0000000100010eab in setup_screen_size_settings ()
#8 0x000000010000f0a8 in __static_initialization_and_destruction_0 ()
For the fink-installed coot,
... (a very long list of library object files missing)
warning: Could not find object file
"/sw/src/fink.build/libcroco3-0.6.6-1/libcroco-0.6.6/src/.libs/libcroco_0_6_la-cr-string.o"
- no debug information available for "cr-string.c".
....... done
#0 0x0000000000000000 in ?? ()
(gdb) where
#0 0x0000000000000000 in ?? ()
#1 0x00000001033f90f7 in PyEval_GetGlobals ()
#2 0x0000000103419382 in PyImport_Import ()
#3 0x00000001034195b8 in PyImport_ImportModule ()
#4 0x00000001033590e8 in PyCapsule_Import ()
#5 0x000000010040b01e in SWIG_Python_GetModule ()
#6 0x000000010046b01d in init_coot ()
#7 0x0000000100011c5b in main ()
Thanks,
Engin
--
Andreas Förster, Research Associate
Paul Freemont & Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
http://www.msf.bio.ic.ac.uk
