On 07/06/2013 09:30 PM, PICCA Frédéric-Emmanuel wrote:
Hello Marcin
http://www2.mrc-lmb.cam.ac.uk/groups/murshudov/coot/source/
is it the official location for the source packages ?
No.
./autogen.sh
don't
I was speaking for a fresh svn checkout of coot, not from the source package.
./configure
https://aur.archlinux.org/packages/co/coot/PKGBUILD
thanks for the link, I will investigate about this ./configure line
Another thing: Coot works only with single-precision FFTW2. You may
need to prefix rfftw.h header in CXXFFTSolventMap.h with 's' and make
sure it's linked with -lsfftw.
maybe it would be interesting to switch to fftw3.
GLWT. This interface is via Clipper.
for now the current svn failled with
libtool: link: (cd ".libs" && rm -f "libcoot-map-heavy.so.0" && ln -s
"libcoot-map-heavy.so.0.0.0" "libcoot-map-heavy.so.0")
libtool: link: (cd ".libs" && rm -f "libcoot-map-heavy.so" && ln -s
"libcoot-map-heavy.so.0.0.0" "libcoot-map-heavy.so")
libtool: link: ar cru .libs/libcoot-map-heavy.a coot-map-heavy.o coot-fffear.o
libtool: link: ranlib .libs/libcoot-map-heavy.a
libtool: link: ( cd ".libs" && rm -f "libcoot-map-heavy.la" && ln -s
"../libcoot-map-heavy.la" "libcoot-map-heavy.la" )
g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\"
-DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1
-DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I..
-DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DHAVE_GSL -DPKGDATADIR='"/usr/local/share/coot"' -g -O2 -MT test-h-bonds.o -MD -MP -MF
.deps/test-h-bonds.Tpo -c -o test-h-bonds.o test-h-bonds.cc
mv -f .deps/test-h-bonds.Tpo .deps/test-h-bonds.Po
/bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL
-DPKGDATADIR='"/usr/local/share/coot"' -g -O2 -o test-h-bonds test-h-bonds.o
./libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la
../utils/libcoot-utils.la
libtool: link: g++ -DHAVE_GSL -DPKGDATADIR=\"/usr/local/share/coot\" -g -O2 -o
.libs/test-h-bonds test-h-bonds.o ./.libs/libcoot-coord-utils.so
../geometry/.libs/libcoot-geometry.so ../mini-mol/.libs/libcoot-mini-mol.so
../utils/.libs/libcoot-utils.so
/usr/bin/ld: test-h-bonds.o: undefined reference to symbol '_Z11InitMatTypev'
/usr/lib/i386-linux-gnu/libmmdb.so.0: error adding symbols: DSO missing from
command line
maybe a missing LIBADD.
That is mmdb. libmmdb is a dependency of libcoot-mini-mol.
Hmm...
Paul.
